Evidence map›Paper›PMID 12068117›Full record

ArticlePlant physiology2002

Photochemical properties of the flavin mononucleotide-binding domains of the phototropins from Arabidopsis, rice, and Chlamydomonas reinhardtii.

Masahiro Kasahara, Trevor E Swartz, Margaret A Olney, Akihiko Onodera, Nobuyoshi Mochizuki, Hideya Fukuzawa, Erika Asamizu, Satoshi Tabata, Hiromi Kanegae, Makoto Takano and 3 more

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In one paragraph

Article in Plant physiology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
25.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 287 citations in OpenAlex.

  1. Article
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  15. Article
  16. Review
  17. Article
  18. Review
  19. Domain Organization in Plant Blue-Light Receptor Phototropin2 ofInternational journal of molecular sciences · 2020
    Review
  20. Article

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Masahiro KasaharaNational Institute for Basic Biology, Okazaki 444-8585, Japan.
Trevor E Swartz
Margaret A Olney
Akihiko Onodera
Nobuyoshi Mochizuki
Hideya Fukuzawa
Erika Asamizu
Satoshi Tabata
Hiromi Kanegae
Makoto Takano
John M Christie
Akira Nagatani
Winslow R Briggs
Kyoto University · JPCarnegie Institution for Science · USInstitute of Agrobiological Sciences · JPKazusa DNA Research Institute · JPDepartment of Plant Biology · USNational Institute for Basic Biology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phototropins (phot1 and phot2, formerly designated nph1 and npl1) are blue-light receptors that mediate phototropism, blue light-induced chloroplast relocation, and blue light-induced stomatal opening in Arabidopsis. Phototropins contain two light, oxygen, or voltage (LOV) domains at their N termini (LOV1 and LOV2), each a binding site for the chromophore flavin mononucleotide (FMN). Their C termini contain a serine/threonine protein kinase domain. Here, we examine the kinetic properties of the LOV domains of Arabidopsis phot1 and phot2, rice (Oryza sativa) phot1 and phot2, and Chlamydomonas reinhardtii phot. When expressed in Escherichia coli, purified LOV domains from all phototropins examined bind FMN tightly and undergo a self-contained photocycle, characterized by fluorescence and absorption changes induced by blue light (T. Sakai, T. Kagawa, M. Kasahara, T.E. Swartz, J.M. Christie, W.R. Briggs, M. Wada, K. Okada [2001] Proc Natl Acad Sci USA 98: 6969-6974; M. Salomon, J.M. Christie, E. Knieb, U. Lempert, W.R. Briggs [2000] Biochemistry 39: 9401-9410). The photocycle involves the light-induced formation of a cysteinyl adduct to the C(4a) carbon of the FMN chromophore, which subsequently breaks down in darkness. In each case, the relative quantum efficiencies for the photoreaction and the rate constants for dark recovery of LOV1, LOV2, and peptides containing both LOV domains are presented. Moreover, the data obtained from full-length Arabidopsis phot1 and phot2 expressed in insect cells closely resemble those obtained for the tandem LOV-domain fusion proteins expressed in E. coli. For both Arabidopsis and rice phototropins, the LOV domains of phot1 differ from those of phot2 in their reaction kinetic properties and relative quantum efficiencies. Thus, in addition to differing in amino acid sequence, the phototropins can be distinguished on the basis of the photochemical cycles of their LOV domains. The LOV domains of C. reinhardtii phot also undergo light-activated spectral changes consistent with cysteinyl adduct formation. Thus, the phototropin family extends over a wide evolutionary range from unicellular algae to higher plants.

Indexed as

Drosophila ProteinsEye ProteinsPhotoreceptor Cells, InvertebrateAnimalsArabidopsisArabidopsis ProteinsBinding SitesBiological TransportChlamydomonas reinhardtiiChloroplastsCryptochromesDarknessEscherichia coliFlavin MononucleotideFlavoproteinsFluorescenceArabidopsis ProteinsCRY1 protein, Arabidopsiscry protein, DrosophilaCryptochromesDrosophila ProteinsEye ProteinsFlavin MononucleotideFlavoproteinsNPH1 protein, ArabidopsisPhosphoproteinsPHOT2 protein, ArabidopsisPhotosynthetic Reaction Center Complex ProteinsProtein Serine-Threonine KinasesReceptors, G-Protein-CoupledRecombinant Fusion Proteins

Identifiers

PMID12068117
PMCPMC161699
OpenAlexW2161754368

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.