Evidence map›Paper›PMID 12065532›Full record

ArticleInfection and immunity2002

Analysis of sequence diversity at the highly polymorphic Cpgp40/15 locus among Cryptosporidium isolates from human immunodeficiency virus-infected children in South Africa.

Brett A Leav, Malanie R Mackay, Akudo Anyanwu, Roberta M O' Connor, Ana Maria Cevallos, Gurpreet Kindra, Nigel C Rollins, Michael L Bennish, Richard G Nelson, Honorine D Ward

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 3 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 3 syntheses or guidelines pooled it, 170 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Trial
  6. Article
  7. Prevalence and Molecular Characterization ofPathogens (Basel, Switzerland) · 2025
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  9. Microorganisms · 2024
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  10. SubtypingMicroorganisms · 2020
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  13. Article
  14. Occurrence ofHeliyon · 2018
    Article
  15. Article
  16. Review
  17. Molecular Epidemiology ofFrontiers in microbiology · 2017
    Article
  18. Cryptosporidium and cryptosporidiosis: the African perspective.Environmental science and pollution research international · 2016
    Review
  19. Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Brett A LeavDivision of Geographic Medicine and Infectious Diseases, Tufts New England Medical Center, Boston, Massachusetts 02111, USA.
Malanie R Mackay
Akudo Anyanwu
Roberta M O' Connor
Ana Maria Cevallos
Gurpreet Kindra
Nigel C Rollins
Michael L Bennish
Richard G Nelson
Honorine D Ward
Tufts Medical Center · USUniversity of KwaZulu-Natal · ZASan Francisco General Hospital · US

Funding

PILOT AND FEASIBILITY STUDIESP30DK034928 · NIDDK · TUFTS MEDICAL CENTER · PI PLAUT, ANDREW GEORGE · 1986 to 2007
$8.5M
NEMCH CLINICAL RESEARCH ON AIDS TRAINING GRANTT32AI007438 · NIAID · TUFTS MEDICAL CENTER · PI WANKE, CHRISTINE A · 1992 to 2012
$2.5M
HIV PATHOGENESIS TRAINING PROGRAMT32AI007389 · NIAID · TUFTS MEDICAL CENTER · PI WARD, HONORINE D · 1990 to 2011
$2.3M
BUILDING CAPACITY IN SUPPORT OF ICIDR PROGRAMD43TW005571 · FIC · TUFTS MEDICAL CENTER · PI BENNISH, MICHAEL L. · 2000 to 2004
$500k
MID CAREER INVESTIGATOR AWARD IN PATIENT ORIENTED RESEARK24AI001671 · NIAID · TUFTS MEDICAL CENTER · PI BENNISH, MICHAEL L. · 1999 to 2003
$429k
C. PARVUM GLYCOPROTEINS: POTENTIAL TARGETS FOR THERAPYR21AI046299 · NIAID · TUFTS MEDICAL CENTER · PI WARD, HONORINE D · 2000 to 2002
$297k
CRYPTOSPORIDIUM DHFR AS A CHEMOTHERAPEUTIC TARGETU01AI040319 · NIAID · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI NELSON, RICHARD G · 1996 to 1999
–
FIC NIH HHS D43 TW005571FIC NIH HHS TW05571NIAID NIH HHS AI01671NIAID NIH HHS AI07389NIAID NIH HHS AI07438NIAID NIH HHS AI40319NIAID NIH HHS AI42565NIAID NIH HHS AI46299NIAID NIH HHS K24 AI001671NIAID NIH HHS T32 AI007389NIAID NIH HHS T32 AI007438NIDDK NIH HHS P30 DK034928NIDDK NIH HHS P30 DK 34928Wellcome Trust
6 · The paper itself

Abstract

Cryptosporidium sp. is a significant cause of diarrheal disease, particularly in human immunodeficiency virus (HIV)-infected patients in developing countries. We recently cloned and sequenced several alleles of the highly polymorphic single-copy Cryptosporidium parvum gene Cpgp40/15. This gene encodes a precursor protein that is proteolytically cleaved to yield mature cell surface glycoproteins gp40 and gp15, which are implicated in zoite attachment to and invasion of enterocytes. The most-striking feature of the Cpgp40/15 alleles and proteins is their unprecedented degree of sequence polymorphism, which is far greater than that observed for any other gene or protein studied in C. parvum to date. In this study we analyzed nucleic acid and amino acid sequence polymorphism at the Cpgp40/15 locus of 20 C. parvum isolates from HIV-infected South African children. Fifteen isolates exhibited one of four previously identified genotype I alleles at the Cpgp40/15 locus (Ia, Ib, Ic, and Id), while five displayed a novel set of polymorphisms that defined a new Cpgp40/15 genotype I allele, designated genotype Ie. Surprisingly, only 15 of these isolates exhibited concordant type I alleles at the thrombospondin-related adhesive protein of Cryptosporidium and Cryptosporidium oocyst wall protein loci, while five isolates (all of which displayed Cpgp40/15 genotype Ic alleles) displayed genotype II alleles at these loci. Furthermore, the last five isolates also manifested chimeric genotype Ic/Ib or Ic/II alleles at the Cpgp40/15 locus, raising the possibility of sexual recombination within and between prototypical parasite genotypes. Lastly, children infected with isolates having genotype Ic alleles were significantly older than those infected with isolates displaying other genotype I alleles.

Indexed as

Genetic VariationAIDS-Related Opportunistic InfectionsAllelesAmino Acid SequenceAnimalsBase SequenceChildChild, PreschoolConserved SequenceCryptosporidiosisCryptosporidium parvumDNA, ProtozoanFemaleGenes, ProtozoanGenotypeHumansCpgp40-15 protein, Cryptosporidium parvumDNA, Protozoanoocyst wall protein, CryptosporidiumProtozoan Proteinsthrombospondin-related adhesive protein, protozoan

Identifiers

PMID12065532
PMCPMC128099
OpenAlexW2154321650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.