Evidence map›Paper›PMID 12065478›Full record

ArticleInfection and immunity2002

Proteome analysis of secreted proteins of the gastric pathogen Helicobacter pylori.

Dirk Bumann, Sevil Aksu, Meike Wendland, Katharina Janek, Uschi Zimny-Arndt, Nicolas Sabarth, Thomas F Meyer, Peter R Jungblut

Abstract read
In one paragraph

Article in Infection and immunity, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. RecombinantAntibiotics (Basel, Switzerland) · 2022
    Review
  6. Article
  7. Role of microbial secreted proteins in gut microbiota-host interactions.Frontiers in cellular and infection microbiology · 2022
    Review
  8. Article
  9. Genome-Scale Mining of Novel Anchor Proteins ofFrontiers in microbiology · 2021
    Article
  10. In Silico Structural and Functional Characterization of HtrA Proteins ofTropical medicine and infectious disease · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Dirk BumannDepartment of Molecular Biology, Max-Planck-Institute for Infection Biology, Berlin, Germany.
Sevil Aksu
Meike Wendland
Katharina Janek
Uschi Zimny-Arndt
Nicolas Sabarth
Thomas F Meyer
Peter R Jungblut

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Secreted proteins (the secretome) of the human pathogen Helicobacter pylori may mediate important pathogen-host interactions, but such proteins are technically difficult to analyze. Here, we report on a comprehensive secretome analysis that uses protein-free culture conditions to minimize autolysis, an efficient recovery method for extracellular proteins, and two-dimensional gel electrophoresis followed by peptide mass fingerprinting for protein resolution and identification. Twenty-six of the 33 separated secreted proteins were identified. Among them were six putative oxidoreductases that may be involved in the modification of protein-disulfide bonds, three flagellar proteins, three defined fragments of the vacuolating toxin VacA, the serine protease HtrA, and eight proteins of unknown function. A cleavage site for the amino-terminal passenger domain of VacA between amino acids 991 and 992 was determined by collision-induced dissociation mass spectrometry. Several of the secreted proteins are interesting targets for antimicrobial chemotherapy and vaccine development.

Indexed as

Bacterial ProteinsElectrophoresis, Gel, Two-DimensionalHelicobacter pyloriProteomeStomachBacterial ProteinsProteome

Identifiers

PMID12065478
PMCPMC128097

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.