Evidence map›Paper›PMID 12058064›Full record

ArticleMolecular biology of the cell2002

Identification of genes periodically expressed in the human cell cycle and their expression in tumors.

Michael L Whitfield, Gavin Sherlock, Alok J Saldanha, John I Murray, Catherine A Ball, Karen E Alexander, John C Matese, Charles M Perou, Myra M Hurt, Patrick O Brown and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 810 papers.

0numbers the graph read from it
0cells of the map it votes in
810citing papers in PubMed
22.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

810 citing papers in PubMed, 1,593 citations in OpenAlex.

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750 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Michael L WhitfieldDepartment of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA.
Gavin Sherlock
Alok J Saldanha
John I Murray
Catherine A Ball
Karen E Alexander
John C Matese
Charles M Perou
Myra M Hurt
Patrick O Brown
David Botstein
Florida State University · USHoward Hughes Medical Institute · USStanford University · USUniversity of North Carolina at Chapel Hill · US

Funding

GENE EXPRESSION IN CANCER BY MICROARRAY HYBRIDIZATIONR01CA077097 · NCI · STANFORD UNIVERSITY · PI BROWN, PATRICK O. · 1997 to 2010
$8.7M
A CANCER TAXONOMY BASED ON GENE EXPRESSION PATTERNSU01CA085129 · NCI · STANFORD UNIVERSITY · PI BROWN, PATRICK O. · 1999 to 2003
$8.5M
GENE EXPRESSION PATTERNS OF THE MAMMALIAN CELL CYCLEF32HG000220 · NHGRI · STANFORD UNIVERSITY · PI WHITFIELD, MICHAEL L · 2000 to 2002
$110k
HISTONE GENE EXPRESSION AND A CODING REGION ACTIVATORR01GM046768 · NIGMS · FLORIDA STATE UNIVERSITY · PI HURT, MYRA M · 1992 to 1997
–
NCI NIH HHS CA-77097NCI NIH HHS CA-85129NCI NIH HHS R01 CA077097NCI NIH HHS U01 CA085129NHGRI NIH HHS F32 HG000220NHGRI NIH HHS HG00220-02NIGMS NIH HHS GM-46768
6 · The paper itself

Abstract

The genome-wide program of gene expression during the cell division cycle in a human cancer cell line (HeLa) was characterized using cDNA microarrays. Transcripts of >850 genes showed periodic variation during the cell cycle. Hierarchical clustering of the expression patterns revealed coexpressed groups of previously well-characterized genes involved in essential cell cycle processes such as DNA replication, chromosome segregation, and cell adhesion along with genes of uncharacterized function. Most of the genes whose expression had previously been reported to correlate with the proliferative state of tumors were found herein also to be periodically expressed during the HeLa cell cycle. However, some of the genes periodically expressed in the HeLa cell cycle do not have a consistent correlation with tumor proliferation. Cell cycle-regulated transcripts of genes involved in fundamental processes such as DNA replication and chromosome segregation seem to be more highly expressed in proliferative tumors simply because they contain more cycling cells. The data in this report provide a comprehensive catalog of cell cycle regulated genes that can serve as a starting point for functional discovery. The full dataset is available at http://genome-www.stanford.edu/Human-CellCycle/HeLa/.

Indexed as

Gene Expression RegulationGene Expression Regulation, NeoplasticCell CycleCell DivisionDNA ReplicationEnzymesGenetic VariationGenome, HumanHeLa CellsHumansMitosisMultigene FamilyNeoplasmsOligonucleotide Array Sequence AnalysisProteinsTranscription, GeneticEnzymesProteins

Identifiers

PMID12058064
PMCPMC117619
OpenAlexW2105712639

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.