Evidence map›Paper›PMID 12057959›Full record

ArticleJournal of bacteriology2002

Activation of prophage eib genes for immunoglobulin-binding proteins by genes from the IbrAB genetic island of Escherichia coli ECOR-9.

Carol H Sandt, James E Hopper, Charles W Hill

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 31 citations in OpenAlex.

  1. Genomic analysis ofFrontiers in microbiology · 2024
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  2. The mobilome ofMicrobial genomics · 2023
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  3. Microbiology spectrum · 2023
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  4. Bacteriophages of Shiga Toxin-ProducingPathogens (Basel, Switzerland) · 2021
    Review
  5. Comparative Transcriptomics of Shiga Toxin-Producing and CommensalFrontiers in cellular and infection microbiology · 2020
    Article
  6. Review
  7. Description and Comparative Genomics ofFrontiers in microbiology · 2018
    Article
  8. Classification of a HypervirulentFrontiers in microbiology · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Carol H SandtDepartment of Biochemistry and Molecular Biology, Pennsylvania State College of Medicine, Hershey, Pennsylvania 17033, USA. csandt@psu.edu
James E Hopper
Charles W Hill
Penn State Milton S. Hershey Medical Center · US

Funding

ORGANIZATION AND REORGANIZATION OF THE E COLI GENOMER01GM016329 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI HILL, CHARLES W · 1985 to 1998
–
NIGMS NIH HHS GM16329
6 · The paper itself

Abstract

Four distinct Escherichia coli immunoglobulin-binding (eib) genes, each of which encodes a surface-exposed protein that binds immunoglobulins in a nonimmune manner, are carried by separate prophages in E. coli reference (ECOR) strain ECOR-9. Each eib gene was transferred to test E. coli strains, both in the form of multicopy recombinant plasmids and as lysogenized prophage. The derived lysogens express little or no Eib protein, in sharp contrast to the parental lysogen, suggesting that ECOR-9 has an expression-enhancing activity that the derived lysogens lack. Supporting this hypothesis, we cloned from ECOR-9 overlapping genes, ibrA and ibrB (designation is derived from "immunoglobulin-binding regulator"), which together activated eib expression in the derived lysogens. The proteins encoded by ibrA and ibrB are very similar to uncharacterized proteins encoded by genes of Salmonella enterica serovar Typhi and E. coli O157:H7 (in a prophage-like element of the Sakai strain and in two O islands of strain EDL933). The genomic segment containing ibrA and ibrB has been designated the IbrAB island. It contains regions of homology to the Shiga toxin-converting prophage, Stx2, as well as genes homologous to phage antirepressor genes. The left boundary between the IbrAB island and the chromosomal framework is located near min 35.8 of the E. coli K-12 genome. Homology to IbrAB was found in certain other ECOR strains, including the other five eib-positive strains and most strains of the phylogenetic group B2. Sequencing of a 1.1-kb portion of ibrAB revealed that the other eib-positive strains diverge by </=0.1% from ECOR-9, whereas eib-negative ECOR-47 diverges by 16%.

Indexed as

Chromosome MappingCloning, MolecularColiphagesEscherichia coliEscherichia coli ProteinsGene DosageGene Expression Regulation, BacterialGene OrderImmunoglobulinsLysogenyMembrane ProteinsMolecular Sequence DataRegulatory Sequences, Nucleic AcidSequence Homology, Nucleic AcidTranscription FactorsEibA protein, E coliEscherichia coli ProteinsIbrA protein, E coliIbrB protein, E coliImmunoglobulinsMembrane ProteinsTranscription Factors

Identifiers

PMID12057959
PMCPMC135156
OpenAlexW2033632694

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.