Evidence map›Paper›PMID 12057957›Full record

ArticleJournal of bacteriology2002

Type 1 capsule genes of Staphylococcus aureus are carried in a staphylococcal cassette chromosome genetic element.

Thanh T Luong, Shu Ouyang, Kelly Bush, Chia Y Lee

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 98 citations in OpenAlex.

  1. GlutamateJournal of bacteriology · 2024
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  8. Factors Contributing to the Evolution ofFrontiers in microbiology · 2018
    Review
  9. Frontiers in microbiology · 2017
    Article
  10. Staphylococcus aureus mobile genetic elements.Molecular biology reports · 2014
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Mobile genetic elements of Staphylococcus aureus.Cellular and molecular life sciences : CMLS · 2010
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Thanh T LuongDepartment of Microbiology, Molecular Genetics and Immunology, University of Kansas Medical Center, Kansas City, Kansas 66160, USA.
Shu Ouyang
Kelly Bush
Chia Y Lee
University of Kansas Medical Center · US

Funding

TYPE 8 CAPSULE OF STAPHYLOCOCCUS AUREUSR01AI037027 · NIAID · UNIV OF ARKANSAS FOR MED SCIS · PI LEE, CHIA Y. · 1995 to 2013
$3.2M
NIAID NIH HHS AI37027NIAID NIH HHS R01 AI037027
6 · The paper itself

Abstract

The cap1 genes are required for the synthesis of type 1 capsular polysaccharide (CP1) in Staphylococcus aureus. We previously showed that the cap1 locus was associated with a discrete genetic element in S. aureus M. In this report, we defined the boundaries of the cap1 element by comparing its restriction pattern to that of a corresponding region from the CP1-negative strain Becker. The element was located in the SmaI-G chromosomal fragment of the standard mapping strain NCTC8325. The sequences of the entire cap1 element and the flanking regions were determined. We found that there were two additional cap1 genes not previously identified. The cap1 operon was located in a staphylococcal cassette chromosome (SCC) element similar to the resistance island SCCmec recently described for methicillin resistance in S. aureus. Notably, the SCCcap1 element was located at the same insertion site as all the SCCmec elements in the staphylococcal chromosome. The excision of SCCcap1 could be demonstrated only in the presence of the recombinase genes from an SCCmec element, verifying that SCCcap1 is a genuine SCC element but defective in mobilization. A novel enterotoxin gene, whose transcript was detected by Northern blotting, was found next to the SCCcap1 locus. We propose that the enterotoxin gene and SCCcap1 were inserted into this locus at the juxtaposition by independent events. Sequence comparison revealed numerous DNA rearrangements and mutations in SCCcap1 and the left flanking region, suggesting that the SCCcap1 had been inserted at the SCC attC site a long time ago. In addition, most genes in this region were incomplete, with the exception of the 15 cap1 genes, implying that the cap1 genes confer a survival advantage on strain M.

Indexed as

Genes, BacterialRegulatory Sequences, Nucleic Acid3' Flanking Region5' Flanking RegionBase SequenceChromosome MappingChromosomes, BacterialEnterotoxinsGene OrderMolecular Sequence DataPhysical Chromosome MappingPolysaccharides, BacterialSequence Analysis, DNAStaphylococcus aureusEnterotoxinsPolysaccharides, Bacterial

Identifiers

PMID12057957
PMCPMC135137
OpenAlexW2114717739

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.