Evidence map›Paper›PMID 12057921›Full record

ArticleThe American journal of pathology2002

Gene expression in Wilms' tumor mimics the earliest committed stage in the metanephric mesenchymal-epithelial transition.

Chi-Ming Li, Meirong Guo, Alain Borczuk, Charles A Powell, Michelle Wei, Harshwardhan M Thaker, Richard Friedman, Ulf Klein, Benjamin Tycko

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The American journal of pathology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 234 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. All eyes on Eya: A unique transcriptional co-activator and phosphatase in cancer.Biochimica et biophysica acta. Reviews on cancer · 2024
    Review
  5. Article
  6. In Vitro Phosphatase Assays for the Eya2 Tyrosine Phosphatase.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. FXR1 expression domain in Wilms tumor.Journal of pediatric surgery · 2019
    Article
  17. Article
  18. Article
  19. Article
  20. The Eya phosphatase: Its unique role in cancer.The international journal of biochemistry & cell biology · 2018
    Review

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Chi-Ming LiInstitute for Cancer Genetics, Columbia University, New York, New York, USA.
Meirong Guo
Alain Borczuk
Charles A Powell
Michelle Wei
Harshwardhan M Thaker
Richard Friedman
Ulf Klein
Benjamin Tycko
Cancer Genetics (United States) · USColumbia University · USSylvester Comprehensive Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wilms' tumor (WT) has been considered a prototype for arrested cellular differentiation in cancer, but previous studies have relied on selected markers. We have now performed an unbiased survey of gene expression in WTs using oligonucleotide microarrays. Statistical criteria identified 357 genes as differentially expressed between WTs and fetal kidneys. This set contained 124 matches to genes on a microarray used by Stuart and colleagues (Stuart RO, Bush KT, Nigam SK: Changes in global gene expression patterns during development and maturation of the rat kidney. Proc Natl Acad Sci USA 2001, 98:5649-5654) to establish genes with stage-specific expression in the developing rat kidney. Mapping between the two data sets showed that WTs systematically overexpressed genes corresponding to the earliest stage of metanephric development, and underexpressed genes corresponding to later stages. Automated clustering identified a smaller group of 27 genes that were highly expressed in WTs compared to fetal kidney and heterologous tumor and normal tissues. This signature set was enriched in genes encoding transcription factors. Four of these, PAX2, EYA1, HBF2, and HOXA11, are essential for cell survival and proliferation in early metanephric development, whereas others, including SIX1, MOX1, and SALL2, are predicted to act at this stage. SIX1 and SALL2 proteins were expressed in the condensing mesenchyme in normal human fetal kidneys, but were absent (SIX1) or reduced (SALL2) in cells at other developmental stages. These data imply that the blastema in WTs has progressed to the committed stage in the mesenchymal-epithelial transition, where it is partially arrested in differentiation. The WT-signature set also contained the Wnt receptor FZD7, the tumor antigen PRAME, the imprinted gene NNAT and the metastasis-associated transcription factor E1AF.

Indexed as

Gene Expression Regulation, NeoplasticNADPH OxidasesReceptors, G-Protein-CoupledAdenovirus E1A ProteinsAntigens, NeoplasmDNA-Binding ProteinsEpitheliumForkhead Transcription FactorsFrizzled ReceptorsGene Expression Regulation, DevelopmentalHomeodomain ProteinsHumansIntracellular Signaling Peptides and ProteinsKidneyMembrane ProteinsMesodermAdenovirus E1A ProteinsAntigens, NeoplasmDNA-Binding ProteinsETV4 protein, humanEYA1 protein, humanForkhead Transcription FactorsFOXG1 protein, humanFrizzled ReceptorsFZD7 protein, humanHomeodomain ProteinsHOXA11 protein, humanIntracellular Signaling Peptides and ProteinsMembrane ProteinsNADH, NADPH OxidoreductasesNADPH OxidasesNerve Tissue ProteinsNNAT protein, humanNuclear ProteinsPAX2 protein, humanPAX2 Transcription FactorPRAME protein, humanProtein Tyrosine PhosphatasesProto-Oncogene ProteinsProto-Oncogene Proteins c-etsReceptors, Cell SurfaceReceptors, G-Protein-CoupledSALL2 protein, humanSIX1 protein, humansuperoxide-forming enzymeTrans-ActivatorsTranscription Factors

Identifiers

PMID12057921
PMCPMC1850829
OpenAlexW2011399707

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.