Evidence map›Paper›PMID 12052885›Full record

ArticleMolecular and cellular biology2002

Kinetics of a gamma interferon response: expression and assembly of CIITA promoter IV and inhibition by methylation.

Ann C Morris, Guy W Beresford, Myesha R Mooney, Jeremy M Boss

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 127 citations in OpenAlex.

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1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ann C MorrisDepartment of Microbiology and Immunology, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Guy W Beresford
Myesha R Mooney
Jeremy M Boss
Emory University · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008490 · NIGMS · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2022
$8.0M
MHC Class II Transactivator Function and RegulationR01AI034000 · NIAID · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1993 to 2009
$2.6M
Regulation of the MHC Class II Transactivator CIITAR56AI034000 · NIAID · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 2010 to 2010
$383k
MHC Class II Bare Lymphocyte Syndrome factorsR21AI034000 · NIAID · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 2003 to 2003
$342k
MHC CLASS II AND FETAL/MATERNAL IMMUNITYR01HD034440 · NICHD · EMORY UNIVERSITY · PI BOSS, JEREMY M. · 1996 to 2000
$273k
PREDOCTORAL STUDIES IN IMMUNOLOGY AT EMORY UNIVERSITYF31GM020675 · NIGMS · EMORY UNIVERSITY · PI MOONEY, MYESHA R · 2000 to 2004
$169k
NIAID NIH HHS AI34000NIAID NIH HHS R01 AI034000NIAID NIH HHS R21 AI034000NIAID NIH HHS R56 AI034000NICHD NIH HHS HD34440NIGMS NIH HHS F31 GM020675NIGMS NIH HHS GM20675NIGMS NIH HHS T32 GM008490
6 · The paper itself

Abstract

Chromatin immunoprecipitation assays were employed to assess the kinetics of transcription factor assembly and histone modifications that occur during gamma interferon (IFN-gamma) induction of CIITA gene expression. CIITA is the master regulator of major histocompatibility complex class II transcription. Promoter IV (PIV), the major IFN-gamma responsive promoter for CIITA expression, requires both STAT1 and IFN regulatory factor 1 (IRF-1) for induction by IFN-gamma. STAT1 binding to PIV was detected first and was accompanied by a modest acetylation of histones H3 and H4 that were associated with the region. Despite these changes, which occurred within 30 min of IFN-gamma treatment, CIITA mRNA was not detected until IRF-1 protein was synthesized and bound to its site, a process that required >120 min. In contrast to these events, fetal trophoblast-like cell lines, which are refractory to CIITA induction by IFN-gamma, failed to assemble the above factors or modify their chromatin, suggesting that accessibility to the promoter is blocked. Bisulfite sequencing of PIV showed strong hypermethylation of PIV, providing a link between methylation, chromatin structure, and factor binding. Together, this analysis provides a kinetic view of the activation of the CIITA gene in response to IFN-gamma and shows that regulatory factor assembly, chromatin modification, and gene expression proceed in discrete steps.

Indexed as

Nuclear ProteinsAcetylationBase SequenceCells, CulturedChromatinCpG IslandsDNA-Binding ProteinsDNA MethylationGene Expression RegulationGenes, MHC Class IIHistonesHumansInterferon-gammaInterferon Regulatory Factor-1KineticsMolecular BiologyChromatinDNA-Binding ProteinsHistoneshydrogen sulfiteInterferon-gammaInterferon Regulatory Factor-1IRF1 protein, humanMHC class II transactivator proteinNuclear ProteinsPhosphoproteinsSTAT1 protein, humanSTAT1 Transcription FactorSulfitesTrans-Activators

Identifiers

PMID12052885
PMCPMC133907
OpenAlexW2106290083

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.