Evidence map›Paper›PMID 12052875›Full record

ArticleMolecular and cellular biology2002

A Functional chromatin domain does not resist X chromosome inactivation: silencing of cLys correlates with methylation of a dual promoter-replication origin.

Suyinn Chong, Joanna Kontaraki, Constanze Bonifer, Arthur D Riggs

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Dosage compensation and gene expression on the mammalian X chromosome: one plus one does not always equal two.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2009
    Review
  5. Escape from X chromosome inactivation is an intrinsic property of the Jarid1c locus.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  6. Article
  7. A DNA insulator prevents repression of a targeted X-linked transgene but not its random or imprinted X inactivation.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Suyinn ChongDivision of Biology, Beckman Research Institute of the City of Hope, Duarte, California 91010, USA.
Joanna Kontaraki
Constanze Bonifer
Arthur D Riggs
City Of Hope National Medical Center · USUniversity of Leeds · GB

Funding

X-CHROMOSOME INACTIVATION AND DNA METHYLATIONR01GM050575 · NIGMS · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI RIGGS, ARTHUR D. · 1993 to 2002
$1.3M
NIGMS NIH HHS GM50575Wellcome Trust
6 · The paper itself

Abstract

To investigate the molecular mechanism(s) involved in the propagation and maintenance of X chromosome inactivation (XCI), the 21.4-kb chicken lysozyme (cLys) chromatin domain was inserted into the Hprt locus on the mouse X chromosome. The inserted fragment includes flanking matrix attachment regions (MARs), an origin of bidirectional replication (OBR), and all the cis-regulatory elements required for correct tissue-specific expression of cLys. It also contains a recently identified and widely expressed second gene, cGas41. The cLys domain is known to function as an autonomous unit resistant to chromosomal position effects, as evidenced by numerous transgenic mouse lines showing copy-number-dependent and development-specific expression of cLys in the myeloid lineage. We asked the questions whether this functional chromatin domain was resistant to XCI and whether the X inactivation signal could spread across an extended region of avian DNA. A generally useful method was devised to generate pure populations of macrophages with the transgene either on the active (Xa) or the inactive (Xi) chromosome. We found that (i) cLys and cGas41 are expressed normally from the Xa; (ii) the cLys chromatin domain, even when bracketed by MARs, is not resistant to XCI; (iii) transcription factors are excluded from lysozyme enhancers on the Xi; and (iv) inactivation correlates with methylation of a CpG island that is both an OBR and a promoter of the cGas41 gene.

Indexed as

DNA MethylationDosage Compensation, GeneticPromoter Regions, GeneticAnimalsChickensChromatinEnhancer Elements, GeneticFemaleHypoxanthine PhosphoribosyltransferaseMacrophagesMaleMiceMice, TransgenicMuramidaseReplication OriginTranscription FactorsChromatinHypoxanthine PhosphoribosyltransferaseMuramidaseTranscription FactorsYEATS4 protein, human

Identifiers

PMID12052875
PMCPMC133922
OpenAlexW2162199429

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.