Evidence map›Paper›PMID 12034832›Full record

ArticleNucleic acids research2002

Phenotypic and genotypic variation in methylases involved in type II restriction-modification systems in Helicobacter pylori.

Tohru Takata, Rahul Aras, Donald Tavakoli, Takafumi Ando, Asalia Z Olivares, Martin J Blaser

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

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  10. Genomic methylation: a tool for typing Helicobacter pylori isolates.Applied and environmental microbiology · 2007
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Tohru TakataDepartment of Medicine, New York University School of Medicine, New York, NY 10016, USA. takattol@cis.fukuoka-u.ac.jp
Rahul Aras
Donald Tavakoli
Takafumi Ando
Asalia Z Olivares
Martin J Blaser
New York University · US

Funding

NIGMS NIH HHS R01GM62370
6 · The paper itself

Abstract

To determine relationships between Helicobacter pylori geographical origin and type II methylase activity, we examined 122 strains from various locations around the world for methylase expression. Most geographic regions possessed at least one strain resistant to digestion by each of 14 restriction endonucleases studied. Across all of the strains studied, the average number of active methylases was 8.2 +/- 1.9 with no significant variation between the major geographic regions. Although seven pairs of isolates showed the same susceptibility patterns, their cagA/vacA status differed, and the remaining 108 strains each possessed unique patterns of susceptibility. From a single clonal group, 15 of 18 strains showed identical patterns of resistance, but diverged with respect to M.MboII activity. All of the methylases studied were present in all major human population groupings, suggesting that their horizontal acquisition pre-dated the separation of these populations. For the hpyV and hpyAIV restriction-modification systems, an in-depth analysis of genotype, indicating extensive diversity of cassette size and chromosomal locations regardless of the susceptibility phenotype, points toward substantial strain-specific selection involving these loci.

Indexed as

Antigens, BacterialBacterial ProteinsBlotting, SouthernDeoxyribonucleases, Type II Site-SpecificDNA Modification MethylasesGenes, BacterialGenetic VariationGenotypeGeographyHelicobacter pyloriPhenotypePolymerase Chain ReactionSpecies SpecificityAntigens, BacterialBacterial ProteinscagA protein, Helicobacter pyloriDeoxyribonucleases, Type II Site-SpecificDNA Modification MethylasesVacA protein, Helicobacter pylori

Identifiers

PMID12034832
PMCPMC117188
OpenAlexW2137179302

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.