Evidence map›Paper›PMID 12032091›Full record

ArticleThe EMBO journal2002

The DEAD box protein Dhh1 stimulates the decapping enzyme Dcp1.

Nicole Fischer, Karsten Weis

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 176 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Dcp2 C-terminaleLife · 2022
    Article
  11. Eukaryotic mRNA Decapping Activation.Frontiers in genetics · 2022
    Review
  12. Review
  13. Lithium Chloride Sensitivity in Yeast and Regulation of Translation.International journal of molecular sciences · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Nicole FischerDepartment of Molecular and Cell Biology, Division of Cell and Developmental Biology, University of California-Berkeley, Berkeley, CA 94720-3200, USA.
Karsten Weis
University of California, Berkeley · US

Funding

Structure and function of the nuclear pore complexR01GM058065 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI HEALD, REBECCA W · 1998 to 2015
$4.6M
NIGMS NIH HHS GM 58065NIGMS NIH HHS R01 GM058065
6 · The paper itself

Abstract

An important control step in the regulation of cytoplasmic mRNA turnover is the removal of the m(7)G cap structure at the 5' end of the message. Here, we describe the functional characterization of Dhh1, a highly conserved member of the family of DEAD box-containing proteins, as a regulator of mRNA decapping in Saccharomyces cerevisiae. Dhh1 is a cytoplasmic protein and is shown to be in a complex with the mRNA degradation factor Pat1/Mtr1 and with the 5'-3' exoribonuclease Xrn1. Dhh1 specifically affects mRNA turnover in the deadenylation-dependent decay pathway, but does not act on the degradation of nonsense-containing mRNAs. Cells that lack dhh1 accumulate degradation intermediates that have lost their poly(A) tail but contain an intact 5' cap structure, suggesting that Dhh1 is required for efficient decapping in vivo. Furthermore, recombinant Dhh1 is able to stimulate the activity of the purified decapping enzyme Dcp1 in an in vitro decapping assay. We propose that the DEAD box protein Dhh1 regulates the access of the decapping enzyme to the m(7)G cap by modulating the structure at the 5' end of mRNAs.

Indexed as

RNA-Binding ProteinsSaccharomyces cerevisiae ProteinsAllelesCytoplasmDEAD-box RNA HelicasesDNA-Binding ProteinsElectrophoresis, Polyacrylamide GelEndopeptidasesExoribonucleasesFluorescent Antibody Technique, IndirectFungal ProteinsGenes, ReporterMutationPlant ProteinsPlasmidsProtein BindingDEAD-box RNA HelicasesDHH1 protein, S cerevisiaedipeptidyl carboxypeptidaseDNA-Binding ProteinsEndopeptidasesExoribonucleasesFungal ProteinsPAT1 protein, S cerevisiaePlant ProteinsRNA-Binding ProteinsRNA HelicasesRNA, MessengerSaccharomyces cerevisiae ProteinsXrn1 protein, plantXRN1 protein, S cerevisiae

Identifiers

PMID12032091
PMCPMC126031
OpenAlexW2016548334

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.