Evidence map›Paper›PMID 12021444›Full record

ArticleProtein science : a publication of the Protein Society2002

Computational stabilization of human growth hormone.

Anton V Filikov, Robert J Hayes, Peizhi Luo, Diane M Stark, Cheryl Chan, Anirban Kundu, Bassil I Dahiyat

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Article
  3. Allosteric Dynamic Control of Binding.Biophysical journal · 2015
    Article
  4. Article
  5. Article
  6. Computational approaches for rational design of proteins with novel functionalities.Computational and structural biotechnology journal · 2012
    Review
  7. Article
  8. Article
  9. Article
  10. Combining computational and experimental screening for rapid optimization of protein properties.Proceedings of the National Academy of Sciences of the United States of America · 2002
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Anton V FilikovXencor, Inc., Monrovia, California 91016, USA.
Robert J Hayes
Peizhi Luo
Diane M Stark
Cheryl Chan
Anirban Kundu
Bassil I Dahiyat
Xencor (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recombinant human growth hormone (hGH) is used worldwide for the treatment of pediatric hypopituitary dwarfism and in children suffering from low levels of hGH. It has limited stability in solution, and because of poor oral absorption, is administered by injection, typically several times a week. Development has therefore focused on more stable or sustained-release formulations and alternatives to injectable delivery that would increase bioavailability and make it easier for patients to use. We redesigned hGH computationally to improve its thermostability. A more stable variant of hGH could have improved pharmacokinetics or enhanced shelf-life, or be more amenable to use in alternate delivery systems and formulations. The computational design was performed using a previously developed combinatorial optimization algorithm based on the dead-end elimination theorem. The algorithm uses an empirical free energy function for scoring designed sequences. This function was augmented with a term that accounts for the loss of backbone and side-chain conformational entropy. The weighting factors for this term, the electrostatic interaction term, and the polar hydrogen burial term were optimized by minimizing the number of mutations designed by the algorithm relative to wild-type. Forty-five residues in the core of the protein were selected for optimization with the modified potential function. The proteins designed using the developed scoring function contained six to 10 mutations, showed enhancement in the melting temperature of up to 16 degrees C, and were biologically active in cell proliferation studies. These results show the utility of our free energy function in automated protein design.

Indexed as

Amino Acid SequenceAnimalsCell DivisionCell LineComputer SimulationDrug StabilityEntropyGrowth HormoneHumansMiceMolecular Sequence DataMutationProtein FoldingStatic ElectricityGrowth Hormone

Identifiers

PMID12021444
PMCPMC2373623
OpenAlexW2034790635

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.