Evidence map›Paper›PMID 12021332›Full record

ArticleJournal of virology2002

The human papillomavirus type 31 late 3' untranslated region contains a complex bipartite negative regulatory element.

Sarah A Cumming, Claire E Repellin, Maria McPhillips, Jonathan C Radford, J Barklie Clements, Sheila V Graham

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

  1. The host geneActa biochimica et biophysica Sinica · 2024
    Article
  2. Article
  3. Article
  4. Review
  5. Splicing and Polyadenylation of Human Papillomavirus Type 16 mRNAs.International journal of molecular sciences · 2017
    Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
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  14. Papillomavirus genome structure, expression, and post-transcriptional regulation.Frontiers in bioscience : a journal and virtual library · 2006
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Sarah A CummingInstitute of Virology, University of Glasgow, Glasgow G11 5JR, Scotland.
Claire E Repellin
Maria McPhillips
Jonathan C Radford
J Barklie Clements
Sheila V Graham
University of Glasgow · GBInstitute of Virology of the Slovak Academy of Sciences · SK

Funding

Wellcome Trust
6 · The paper itself

Abstract

The papillomavirus life cycle is tightly linked to epithelial cell differentiation. Production of virus capsid proteins is restricted to the most terminally differentiated keratinocytes in the upper layers of the epithelium. However, mRNAs encoding the capsid proteins can be detected in less-differentiated cells, suggesting that late gene expression is controlled posttranscriptionally. Short sequence elements (less than 80 nucleotides in length) that inhibit gene expression in undifferentiated epithelial cells have been identified in the late 3' untranslated regions (UTRs) of several papillomaviruses, including the high-risk mucosal type human papillomavirus type 16 (HPV-16). Here we show that closely related high-risk mucosal type HPV-31 also contains elements that can act to repress gene expression in undifferentiated epithelial cells. However, the HPV-31 negative regulatory element is surprisingly complex, comprising a major inhibitory element of approximately 130 nucleotides upstream of the late polyadenylation site and a minor element of approximately 110 nucleotides mapping downstream. The first 60 nucleotides of the major element have 68% identity to the negative regulatory element of HPV-16, and these elements bind the same cellular proteins, CstF-64, U2AF(65), and HuR. The minor inhibitory element binds some cellular proteins in common with the major inhibitory element, though it also binds certain proteins that do not bind the upstream element.

Indexed as

3' Untranslated RegionsAntigens, SurfaceGene Expression RegulationNuclear ProteinsRegulatory Sequences, Nucleic AcidBase SequenceCell DifferentiationELAV-Like Protein 1ELAV ProteinsHeLa CellsHumansMolecular Sequence DataPapillomaviridaePoly ARibonucleoproteinsRNA-Binding Proteins3' Untranslated RegionsAntigens, SurfaceELAVL1 protein, humanELAV-Like Protein 1ELAV ProteinsNuclear ProteinsPoly ARibonucleoproteinsRNA-Binding ProteinsSplicing Factor U2AFU2AF2 protein, human

Identifiers

PMID12021332
PMCPMC136222
OpenAlexW2143747418

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.