Evidence map›Paper›PMID 12019223›Full record

ArticleGenetics2002

A conditionally dispensable chromosome controls host-specific pathogenicity in the fungal plant pathogen Alternaria alternata.

Rieko Hatta, Kaoru Ito, Yoshitsugu Hosaki, Takayoshi Tanaka, Aiko Tanaka, Mikihiro Yamamoto, Kazuya Akimitsu, Takashi Tsuge

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 232 citations in OpenAlex.

  1. Comparative Whole-Genome Sequence Analysis ofJournal of fungi (Basel, Switzerland) · 2026
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  3. Whole-Genome Sequencing of PathogenicJournal of fungi (Basel, Switzerland) · 2026
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  4. Journal of fungi (Basel, Switzerland) · 2026
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  5. Article
  6. Article
  7. Article
  8. Article
  9. Defense Pathways of Wheat Plants Inoculated withLife (Basel, Switzerland) · 2024
    Review
  10. Frequent horizontal chromosome transfer between asexual fungal insect pathogens.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Alternaria diseases on potato and tomato.Molecular plant pathology · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Preservation Methods in Isolates ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  17. Non-Mendelian transmission of accessory chromosomes in fungi.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2022
    Review
  18. Article
  19. International journal of molecular sciences · 2022
    Article
  20. Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Rieko HattaGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya, Japan.
Kaoru Ito
Yoshitsugu Hosaki
Takayoshi Tanaka
Aiko Tanaka
Mikihiro Yamamoto
Kazuya Akimitsu
Takashi Tsuge
Nagoya University · JPOkayama University · JPKagawa University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The filamentous fungus Alternaria alternata contains seven pathogenic variants (pathotypes), which produce host-specific toxins and cause diseases on different plants. Previously, the gene cluster involved in host-specific AK-toxin biosynthesis of the Japanese pear pathotype was isolated, and four genes, named AKT genes, were identified. The AKT homologs were also found in the strawberry and tangerine pathotypes, which produce AF-toxin and ACT-toxin, respectively. This result is consistent with the fact that the toxins of these pathotypes share a common 9,10-epoxy-8-hydroxy-9-methyl-decatrienoic acid structural moiety. In this study, three of the AKT homologs (AFT1-1, AFTR-1, and AFT3-1) were isolated on a single cosmid clone from strain NAF8 of the strawberry pathotype. In NAF8, all of the AKT homologs were present in multiple copies on a 1.05-Mb chromosome. Transformation-mediated targeting of AFT1-1 and AFT3-1 in NAF8 produced AF-toxin-minus, nonpathogenic mutants. All of the mutants lacked the 1.05-Mb chromosome encoding the AFT genes. This chromosome was not essential for saprophytic growth of this pathogen. Thus, we propose that a conditionally dispensable chromosome controls host-specific pathogenicity of this pathogen.

Indexed as

Chromosomes, FungalAlternariaCosmidsFragariaFungal ProteinsGenes, FungalGene TargetingKaryotypingMutagenesisMycotoxinsSequence Analysis, DNAFungal ProteinsMycotoxins

Identifiers

PMID12019223
PMCPMC1462115
OpenAlexW2143276554

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.