Evidence map›Paper›PMID 12014990›Full record

ArticleThe Biochemical journal2002

Use of double-stranded RNA-mediated interference to determine the substrates of protein tyrosine kinases and phosphatases.

Marco Muda, Carolyn A Worby, Nancy Simonson-Leff, James C Clemens, Jack E Dixon

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
  3. The Role of Apoptotic Signaling in Axon Guidance.Journal of developmental biology · 2018
    Review
  4. Article
  5. International journal of molecular sciences · 2018
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Marco MudaSerono Reproductive Biology Institute, Inc., Randolph, MA 02368, U.S.A.
Carolyn A Worby
Nancy Simonson-Leff
James C Clemens
Jack E Dixon
University of Michigan · USHoward Hughes Medical Institute · USMerck Serono (Italy) · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite the wealth of information generated by genome-sequencing projects, the identification of in vivo substrates of specific protein kinases and phosphatases is hampered by the large number of candidate enzymes, overlapping enzyme specificity and sequence similarity. In the present study, we demonstrate the power of RNA interference (RNAi) to dissect signal transduction cascades involving specific kinases and phosphatases. RNAi is used to identify the cellular tyrosine kinases upstream of the phosphorylation of Down-Syndrome cell-adhesion molecule (Dscam), a novel cell-surface molecule of the immunoglobulin-fibronectin super family, which has been shown to be important for axonal path-finding in Drosophila. Tyrosine phosphorylation of Dscam recruits the Src homology 2 domain of the adaptor protein Dock to the receptor. Dock, the ortho- logue of mammalian Nck, is also essential for correct axonal path-finding in Drosophila. We further determined that Dock is tyrosine-phosphorylated in vivo and identified DPTP61F as the protein tyrosine phosphatase responsible for maintaining Dock in its non-phosphorylated state. The present study illustrates the versatility of RNAi in the identification of the physiological substrates for protein kinases and phosphatases.

Indexed as

Drosophila ProteinsAdaptor Proteins, Signal TransducingAnimalsAxonsBlotting, WesternCell Adhesion MoleculesDrosophilaNerve Tissue ProteinsPhosphorylationPrecipitin TestsProtein BindingProteinsProtein-Tyrosine KinasesProtein Tyrosine PhosphatasesProtein Tyrosine Phosphatases, Non-ReceptorRecombinant ProteinsAdaptor Proteins, Signal TransducingCell Adhesion Moleculesdock protein, DrosophilaDrosophila ProteinsDscam1 protein, DrosophilaNerve Tissue ProteinsProteinsProtein-Tyrosine KinasesProtein Tyrosine PhosphatasesProtein Tyrosine Phosphatases, Non-ReceptorPtp61F protein, DrosophilaRecombinant ProteinsRNA, Double-Strandedsrc-Family KinasesTyrosine

Identifiers

PMID12014990
PMCPMC1222762
OpenAlexW2106592583

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.