Evidence map›Paper›PMID 12011437›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

Identification of four candidate cGMP targets in Dictyostelium.

Jonathan M Goldberg, Leonard Bosgraaf, Peter J M Van Haastert, Janet L Smith

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Review
  3. Analysis of cGMP Signaling in Dictyostelium.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  4. Structure of LRRK1 and mechanisms of autoinhibition and activation.Nature structural & molecular biology · 2023
    Article
  5. Article
  6. Cells · 2022
    Review
  7. Roco Proteins: GTPases with a Baroque Structure and Mechanism.International journal of molecular sciences · 2019
    Review
  8. Phosphatidylinositol Kinases and Phosphatases inFrontiers in cellular and infection microbiology · 2019
    Review
  9. Roco Proteins and the Parkinson's Disease-Associated LRRK2.International journal of molecular sciences · 2018
    Review
  10. Review
  11. Article
  12. The arabidopsis cyclic nucleotide interactome.Cell communication and signaling : CCS · 2016
    Article
  13. Review
  14. Article
  15. Article
  16. Signaling mechanisms for chemotaxis.Development, growth & differentiation · 2011
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Jonathan M GoldbergBoston Biomedical Research Institute, 64 Grove Street, Watertown, MA 02472-2829, USA.
Leonard Bosgraaf
Peter J M Van Haastert
Janet L Smith
University of Groningen · NLBoston Biomedical Research Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Dictyostelium, a transient increase in intracellular cGMP is important for cytoskeletal rearrangements during chemotaxis. There must be cGMP-binding proteins in Dictyostelium that regulate key cytoskeletal components after treatment with chemoattractants, but to date, no such proteins have been identified. Using a bioinformatics approach, we have found four candidate cGMP-binding proteins (GbpA-D). GbpA and -B have two tandem cGMP-binding sites downstream of a metallo beta-lactamase domain, a superfamily that includes cAMP phosphodiesterases. GbpC contains the following nine domains (in order): leucine-rich repeats, Ras, MEK kinase, Ras guanine nucleotide exchange factor N-terminal (RasGEF-N), DEP, RasGEF, cGMP-binding, GRAM, and a second cGMP-binding domain. GbpD is related to GbpC, but is much shorter; it begins with the RasGEF-N domain, and lacks the DEP domain. Disruption of the gbpC gene results in loss of all high-affinity cGMP-binding activity present in the soluble cellular fraction. GbpC mRNA levels increase dramatically 8 h after starvation is initiated. GbpA, -B, and -D mRNA levels show less dramatic changes, with gbpA mRNA levels highest 4 h into starvation, gbpB mRNA levels highest in vegetative cells, and gbpD levels highest at 8 h. The identification of these genes is the first step in a molecular approach to studying downstream effects of cGMP signaling in Dictyostelium.

Indexed as

Intracellular Signaling Peptides and ProteinsAmino Acid SequenceAnimalsCarrier ProteinsCyclic GMPDictyosteliumGene ExpressionMolecular Sequence DataProtozoan ProteinsSequence Homology, Amino AcidCarrier ProteinsCyclic GMPcyclic GMP-binding proteinIntracellular Signaling Peptides and ProteinsProtozoan Proteins

Identifiers

PMID12011437
PMCPMC124474
OpenAlexW2083581646

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.