Evidence map›Paper›PMID 12011018›Full record

ArticleInfection and immunity2002

Dissemination of the phage-associated novel superantigen gene speL in recent invasive and noninvasive Streptococcus pyogenes M3/T3 isolates in Japan.

Tadayoshi Ikebe, Akihito Wada, Yoshishige Inagaki, Kumiko Sugama, Rieko Suzuki, Daisuke Tanaka, Aki Tamaru, Yoshihiro Fujinaga, Yoshiaki Abe, Yoshikata Shimizu and 2 more

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In one paragraph

Article in Infection and immunity, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 80 citations in OpenAlex.

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  5. Prevalence of M75Frontiers in microbiology · 2017
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  8. Streptococcal collagen-like protein A and general stress protein 24 are immunomodulating virulence factors of group A Streptococcus.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2013
    Article
  9. Superantigen gene complement of Streptococcus pyogenes--relationship with other typing methods and short-term stability.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2013
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 1 country.

Tadayoshi IkebeDepartment of Bacteriology, National Institute of Infectious Diseases, Tokyo, Japan.
Akihito Wada
Yoshishige Inagaki
Kumiko Sugama
Rieko Suzuki
Daisuke Tanaka
Aki Tamaru
Yoshihiro Fujinaga
Yoshiaki Abe
Yoshikata Shimizu
Haruo Watanabe
Working Group for Group A Streptococcus in Japan
National Institute of Infectious Diseases · JPAsahi Hospital · JPFukushima Prefectural Police · JPKanagawa Prefectural Institute of Public Health · JPOita Prefectural Hospital · JPOsaka Prefectural Institute of Public Health · JPToyama Institute of Health · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Japan, more than 10% of streptococcal toxic shock-like syndrome (TSLS) cases have been caused by Streptococcus pyogenes M3/T3 isolates since the first reported TSLS case in 1992. Most M3/T3 isolates from TSLS or severe invasive infection cases during 1992 to 2001 and those from noninvasive cases during this period are indistinguishable in pulsed-field gel electropherograms. The longest fragments of these recent isolates were 300 kb in size, whereas those of isolates recovered during or before 1973 were 260 kb in size. These 260- and 300-kb fragments hybridized to each other, suggesting the acquisition of an about 40-kb fragment by the recent isolates. The whole part of the acquired fragment was cloned from the first Japanese TSLS isolate, NIH1, and its nucleotide sequence was determined. The 41,796-bp fragment is temperate phage phiNIH1.1, containing a new superantigen gene speL near its right attachment site. The C-terminal part of the deduced amino acid sequence of speL has 48 and 46% similarity with well-characterized erythrogenic toxin SpeC and the most potent superantigen, SmeZ-2, respectively. None of 10 T3 isolates recovered during or before 1973 has speL, whereas all of 18 M3/T3 isolates recovered during or after 1992 and, surprisingly, Streptococcus equi subsp. equi ATCC 9527 do have this gene. Though plaques could not be obtained from phiNIH1.1, its DNA became detectable from the phage particle fraction upon mitomycin C induction, showing that this phage is not defective. A horizontal transfer of the phage carrying speL may explain the observed change in M3/T3 S. pyogenes isolates in Japan.

Indexed as

Bacterial ProteinsAmino Acid SequenceAntigens, BacterialBase SequenceCloning, MolecularDNA, BacterialElectrophoresis, Gel, Pulsed-FieldHumansJapanMolecular Sequence DataSequence Homology, Amino AcidShock, SepticStreptococcus PhagesStreptococcus pyogenesSuperantigensAntigens, BacterialBacterial ProteinsDNA, BacterialspeL protein, Streptococcus pyogenesSuperantigens

Identifiers

PMID12011018
PMCPMC128029
OpenAlexW2166710365

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.