Evidence map›Paper›PMID 12010972›Full record

ArticleInfection and immunity2002

The lbgAB gene cluster of Haemophilus ducreyi encodes a beta-1,4-galactosyltransferase and an alpha-1,6-DD-heptosyltransferase involved in lipooligosaccharide biosynthesis.

Michael V Tullius, Nancy J Phillips, N Karoline Scheffler, Nicole M Samuels, Robert S Munson Jr, Eric J Hansen, Marla Stevens-Riley, Anthony A Campagnari, Bradford W Gibson

Abstract read
In one paragraph

Article in Infection and immunity, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  9. Two Glycosyltransferase Genes ofFrontiers in cellular and infection microbiology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Michael V TulliusDepartment of Pharmaceutical Chemistry, University of California, San Francisco, California 94143-0446, USA.
Nancy J Phillips
N Karoline Scheffler
Nicole M Samuels
Robert S Munson Jr
Eric J Hansen
Marla Stevens-Riley
Anthony A Campagnari
Bradford W Gibson
University of California, San Francisco · USSouthwestern Medical CenterThe Ohio State University · USThe University of Texas Southwestern Medical Center · USUniversity at Buffalo, State University of New York · US

Funding

YEAST THREONINE &SERINE KINASESP41RR001614 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ORTIZ DE MONTELLANO, PAUL R · 1985 to 2011
$24.1M
Haemophilus ducreyi Inhibits PhagocytosisR37AI032011 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI HANSEN, ERIC JOHN · 2006 to 2015
$3.8M
Structure and Function of Haemophilus ducreyi LOSR01AI031254 · NIAID · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI GIBSON, BRADFORD WAYNE · 1994 to 2007
$2.0M
MOLECULAR PATHOGENESIS OF CHANCROIDR01AI032011 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI HANSEN, ERIC JOHN · 1992 to 2004
$1.7M
GENETICS AND BIOLOGY OF THE LOS HAEMOPHILUS DUCREYIR01AI038444 · NIAID · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI MUNSON, ROBERT S. · 1997 to 2001
$486k
Haemophilus ducreyi Inhibits PhagocytosisR56AI032011 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI HANSEN, ERIC JOHN · 2005 to 2005
$390k
STRUCTURE OF H DUCREYI LOS--ROLE IN ADHERENCE/INVASIONR01AI030006 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI CAMPAGNARI, ANTHONY A · 1991 to 2000
$174k
NCRR NIH HHS P41 RR001614NCRR NIH HHS RR01614NIAID NIH HHS AI 30006NIAID NIH HHS AI 31254NIAID NIH HHS AI 32011NIAID NIH HHS AI 38444NIAID NIH HHS R01 AI031254NIAID NIH HHS R01 AI032011NIAID NIH HHS R37 AI032011NIAID NIH HHS R56 AI032011
6 · The paper itself

Abstract

All Haemophilus ducreyi strains examined contain a lipooligosaccharide (LOS) consisting of a single but variable branch oligosaccharide that emanates off the first heptose (Hep-I) of a conserved Hep(3)-phosphorylated 3-deoxy-D-manno-octulosonic acid-lipid A core. In a previous report, identification of tandem genes, lbgA and lbgB, that are involved in LOS biosynthesis was described (Stevens et al., Infect. Immun. 65:651-660, 1997). In a separate study, the same gene cluster was identified and the lbgB (losB) gene was found to be required for transfer of the second sugar, D-glycero-D-manno-heptose (DD-Hep), of the major branch structure (Gibson et al., J. Bacteriol. 179:5062-5071, 1997). In this study, we identified the function of the neighboring upstream gene, lbgA, and found that it is necessary for addition of the third sugar in the dominant oligosaccharide branch, a galactose-linked beta1-->4, to the DD-Hep. LOS from an lbgA mutant and an lbgAB double mutant were isolated and were characterized by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, carbohydrate analysis, mass spectrometry, and nuclear magnetic resonance spectroscopy. The results showed that the mutant strains synthesize truncated LOS glycoforms that terminate after addition of the first glucose (lbgAB) or the disaccharide DD-Hepalpha1-->6Glcbeta1 (lbgA) that is attached to the heptose core. Both mutants show a significant reduction in the ability to adhere to human keratinocytes. Although minor differences were observed after two-dimensional gel electrophoresis of total proteins from the wild-type and mutant strains, the expression levels of the vast majority of proteins were unchanged, suggesting that the differences in adherence and invasion are due to differences in LOS. These studies add to the mounting evidence for a role of full-length LOS structures in the pathophysiology of H. ducreyi infection.

Indexed as

AcylationBacterial AdhesionBacterial ProteinsCarbohydrate SequenceDisaccharidesElectrophoresis, Polyacrylamide GelGenes, BacterialGlycosyltransferasesHaemophilus ducreyiKeratinocytesLipopolysaccharidesMagnetic Resonance SpectroscopyMolecular Sequence DataMultigene FamilyN-Acetyllactosamine SynthaseOligosaccharidesBacterial ProteinsDisaccharidesGlycosyltransferaseslbgA protein, Haemophilus ducreyilbgB protein, H ducreyilipid-linked oligosaccharidesLipopolysaccharidesN-Acetyllactosamine SynthaseOligosaccharidesSodium Dodecyl Sulfate

Identifiers

PMID12010972
PMCPMC128009
OpenAlexW2119538193

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.