Evidence map›Paper›PMID 12000839›Full record

ArticleNucleic acids research2002

Defective nucleotide excision repair in yeast hpr1 and tho2 mutants.

Sergio González-Barrera, Félix Prado, Richard Verhage, Jaap Brouwer, Andrés Aguilera

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sergio González-BarreraDepartamento de Genética, Facultad de Biología, Universidad de Sevilla, Avd. Reina Mercedes 6, 41012 Sevilla, Spain.
Félix Prado
Richard Verhage
Jaap Brouwer
Andrés Aguilera
Universidad de Sevilla · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nucleotide excision repair (NER) and transcription are intimately related. First, TFIIH has a dual role in transcription initiation and NER and, secondly, transcription leads to more efficient repair of damage present in transcribed sequences. It is thought that elongating RNAPII, stalled at a DNA lesion, is used for the loading of the NER machinery in a process termed transcription-coupled repair (TCR). Non-transcribed regions are repaired by the so-called global genome repair (GGR). We have previously defined a number of yeast genes, whose deletions confer transcription-dependent hyper-recombination phenotypes. As these mutations cause impairment of transcription elongation we have assayed whether they also affect DNA repair. We show that null mutations of the HPR1 and THO2 genes, encoding two prominent proteins of the THO complex, increase UV sensitivity of yeast cells lacking GGR. Consistent with this result, molecular analyses of DNA repair of the RPB2 transcribed strand using T4 endo V show that hpr1 and tho2 do indeed impair TCR. However, this effect is not confined to TCR alone because the mutants are slightly affected in GGR. These results indicate that THO affects both transcription and NER. We discuss different alternatives to explain the effect of the THO complex on DNA repair.

Indexed as

Cell Cycle ProteinsDNA-Binding ProteinsSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsBlotting, NorthernDeoxyribonuclease (Pyrimidine Dimer)DNA, FungalDNA RepairDose-Response Relationship, RadiationEndodeoxyribonucleasesFungal ProteinsGene Expression Regulation, FungalGenotypeMating FactorMutationNuclear ProteinsCell Cycle ProteinsDeoxyribonuclease (Pyrimidine Dimer)DNA-Binding ProteinsDNA, FungalEndodeoxyribonucleasesFungal ProteinsHPR1 protein, S cerevisiaeMating FactorNuclear ProteinsPeptidesProtein Subunitsrad26 protein, S pombeRAD7 protein, S cerevisiaeRNA, FungalRNA Polymerase IISaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsTHO2 protein, S cerevisiaeTranscription FactorsUDPglucose-Hexose-1-Phosphate Uridylyltransferase

Identifiers

PMID12000839
PMCPMC115280
OpenAlexW2104864650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.