Evidence map›Paper›PMID 11999834›Full record

ArticlePlant molecular biology

Monitoring large-scale changes in transcript abundance in drought- and salt-stressed barley.

Z Neslihan Oztur, Valentina Talamé, Michael Deyholos, Christine B Michalowski, David W Galbraith, Nermin Gozukirmizi, Roberto Tuberosa, Hans J Bohnert

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Plant molecular biology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 176 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
176citing papers in PubMed, 1 pooled it
47.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

176 citing papers in PubMed, 1 synthesis or guideline pooled it, 585 citations in OpenAlex.

  1. Pooled it
  2. Genome-wide analysis of theFrontiers in plant science · 2026
    Article
  3. Roles of methyl-CpG-binding-domain (MBD) protiens in regulation of biological processes in plants.Physiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Salt stress proteins in plants: An overview.Frontiers in plant science · 2022
    Review
  10. Tolerant mechanism of model legume plantFrontiers in plant science · 2022
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Characterization and Rapid Gene-Mapping of Leaf Lesion Mimic Phenotype ofInternational journal of molecular sciences · 2019
    Article
  20. Article

116 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Z Neslihan OzturDepartment of Biochemistry and Molecular Biophysics, University of Arizona, Biosciences West, Tucson 85721-0088, USA.
Valentina Talamé
Michael Deyholos
Christine B Michalowski
David W Galbraith
Nermin Gozukirmizi
Roberto Tuberosa
Hans J Bohnert
University of Arizona · USUniversity of Bologna · ITUniversity of Illinois Urbana-Champaign · USScientific and Technological Research Council of Turkey · TRTÜBİTAK Marmara Research Center · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Responses to drought and salinity in barley (Hordeum vulgare L. cv. Tokak) were monitored by microarray hybridization of 1463 DNA elements derived from cDNA libraries of 6 and 10 h drought-stressed plants. Functional identities indicated that many cDNAs in these libraries were associated with drought stress. About 38% of the transcripts were novel and functionally unknown. Hybridization experiments were analyzed for drought- and salinity-regulated sequences, with significant changes defined as a deviation from the control exceeding 2.5-fold. Responses of transcripts showed stress-dependent expression patterns and time courses. Nearly 15% of all transcripts were either up- or down-regulated under drought stress, while NaCl led to a change in 5% of the transcripts (24 h, 150 mM NaCl). Transcripts that showed significant up-regulation under drought stress are exemplified by jasmonate-responsive, metallothionein-like, late-embryogenesis-abundant (LEA) and ABA-responsive proteins. Most drastic down-regulation in a category was observed for photosynthesis-related functions. Up-regulation under both drought and salt stress was restricted to ESTs for metallothionein-like and LEA proteins, while increases in ubiquitin-related transcripts characterized salt stress. A number of functionally unknown transcripts from cDNA libraries of drought-stressed plants showed up-regulation by drought but down-regulation by salt stress, documenting how precisely transcript profiles report different growth conditions and environments.

Indexed as

DisastersDown-RegulationGene Expression Regulation, PlantGene LibraryGenes, PlantHordeumOligonucleotide Array Sequence AnalysisPlant RootsRNA, PlantSodium ChlorideTranscription, GeneticUp-RegulationWaterRNA, PlantSodium ChlorideWater

Identifiers

PMID11999834
OpenAlexW1508111995

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.