ArticlePlant molecular biology
Discovery and assay of single-nucleotide polymorphisms in barley (Hordeum vulgare).
Article in Plant molecular biology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 112 citations in OpenAlex.
- Salicylic Acid-Induced Expression Profiles of LRR and LRR-RLK Candidate Genes ModulatePlants (Basel, Switzerland) · 2024Article
- Investigation of genetic relationships within three Miscanthus species using SNP markers identified with SLAF-seq.BMC genomics · 2022Article
- Development of a single-nucleotide-polymorphism marker for specific authentication of Korean ginseng (Journal of ginseng research · 2017Article
- Comparison of SNP and CAPS markers application in genetic research in wheat and barley.BMC plant biology · 2016Review
- Development of SNP markers for genes of the phenylpropanoid pathway and their association to kernel and malting traits in barley.BMC genetics · 2013Article
- A sequence-based genetic linkage map as a reference for Brassica rapa pseudochromosome assembly.BMC genomics · 2011Article
- Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology.BMC genomics · 2011Article
- Cloning and genetic diversity analysis of a new P5CS gene from common bean (Phaseolus vulgaris L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Genome-wide discovery of DNA polymorphism in Brassica rapa.Molecular genetics and genomics : MGG · 2010Article
- Fine mapping, physical mapping and development of diagnostic markers for the Rrs2 scald resistance gene in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Development and evaluation of single-nucleotide polymorphism markers in allotetraploid rapeseed (Brassica napus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome.Functional & integrative genomics · 2008Article
- Transcriptome profiling, sequence characterization, and SNP-based chromosomal assignment of the EXPANSIN genes in cotton.Molecular genetics and genomics : MGG · 2007Article
- Article
- A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis.Genetics · 2007Article
- Single nucleotide polymorphisms in rye (Secale cereale L.): discovery, frequency, and applications for genome mapping and diversity studies.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
- Haplotype structure at seven barley genes: relevance to gene pool bottlenecks, phylogeny of ear type and site of barley domestication.Molecular genetics and genomics : MGG · 2006Article
- Robust allele-specific polymerase chain reaction markers developed for single nucleotide polymorphisms in expressed barley sequences.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2006Article
- Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress.Molecular genetics and genomics : MGG · 2005Article
- Partial sequences of nitrogen metabolism genes in hexaploid wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
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Authors and funding
6 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The least ambiguous genetic markers are those based on completely characterized DNA sequence polymorphisms. Unfortunately, assaying allele states by allele sequencing is slow and cumbersome. The most desirable type of genetic marker would be unambiguous, inexpensive to assay and would be assayable singly or in parallel with hundreds of other markers (multiplexable). In this report we sequenced alleles at 54 barley (Hordeum vulgare ssp. vulgare) loci, 38 of which contained single-nucleotide polymorphisms (SNPs). Many of these 38 loci contained multiple polymorphisms, and a total of 112 polymorphisms were scored in five barley genotypes. The polymorphism data set was analyzed both by using the individual mutations as cladistic characters and by reducing data for each locus to haplotypes. We compared the informativeness of these two approaches by consensus tree construction and bootstrap analysis. Both approaches provided similar results. Since some of the loci sequenced contained insertion/deletion events and multiple point mutations, we thought that these multiple-mutated loci might represent old alleles that predated the divergence of barley from H. spontaneum. We evaluated sequences from a sample of H. spontaneum accessions from the Eastern Mediterranean, and observed similar alleles present in both cultivated barley and H. spontaneum, suggesting either multiple domestication events or multiple transfers of genes between barley and its wild ancestor.
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