Evidence map›Paper›PMID 11972331›Full record

ArticleNucleic acids research2002

Control of IL-2Ralpha gene expression: structural changes within the proximal enhancer/core promoter during T-cell development.

Jung-Hua Yeh, Salvatore Spicuglia, Sanjeex Kumar, Albert Sanchez-Sevilla, Pierre Ferrier, Jean Imbert

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Chapter 5. Nuclear actin-related proteins in epigenetic control.International review of cell and molecular biology · 2009
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jung-Hua YehINSERM U119-IFR57, 27 boulevard Lei Roure, 13009 Marseille, France.
Salvatore Spicuglia
Sanjeex Kumar
Albert Sanchez-Sevilla
Pierre Ferrier
Jean Imbert
Inserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During T-cell development in thymus, CD25, the IL-2 receptor alpha chain (IL-2Ralpha) is already expressed in early double-negative (DN) thymocytes where commitment to T-cell lineage has been established, but subsequently IL-2Ralpha is dramatically down-regulated for the remainder of T-cell development. The loss of IL-2Ralpha expression after expression of the pre-TCR alpha:beta complex on the cell surface is essential for the later specific responses of mature T cells. Using appropriate mouse models and DMS genomic footprinting, we showed that the TATA box in the core promoter region of the murine IL-2Ralpha locus was occupied only in DN CD25+ T cells. Further, by chromatin immunoprecipitation assays, we evidenced that down-regulation of IL-2Ralpha transcription correlated with (i) loss of the basal transcriptional machinery; (ii) dissociation of histone acetylase p300 and BRG1, a member of the ATP-dependent chromatin remodeling complex SWI/SNF; and (iii) histone N-termini dephosphorylation plus deacetylation. In contrast, occupancy of the proximal enhancer region (positive regulatory region I) was not detected by in vivo genomic footprinting though constitutive accessibility of the promoter region for DNase I digestion both in the DN and double-positive stages correlated with the constitutive association of CBP and PCAF to the IL-2Ralpha core promoter. These results exemplify one mechanism by which a promoter enables transcription to switch on and off during T-cell differentiation.

Indexed as

Enhancer Elements, GeneticGene SilencingPromoter Regions, GeneticSaccharomyces cerevisiae ProteinsAcetyltransferasesAnimalsBase SequenceChromatinDeoxyribonuclease IDown-RegulationHistone AcetyltransferasesHistonesInterleukin-2 Receptor alpha SubunitMacromolecular SubstancesMiceMice, Inbred C57BLAcetyltransferasesChromatinDeoxyribonuclease IHistone AcetyltransferasesHistonesIl2ra protein, mouseInterleukin-2 Receptor alpha SubunitMacromolecular SubstancesReceptors, InterleukinSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID11972331
PMCPMC113837
OpenAlexW2131449068

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.