Evidence map›Paper›PMID 11971967›Full record

ArticleMolecular and cellular biology2002

Multiple nucleosome positioning sites regulate the CTCF-mediated insulator function of the H19 imprinting control region.

Meena Kanduri, Chandrasekhar Kanduri, Piero Mariano, Alexander A Vostrov, Wolfgang Quitschke, Victor Lobanenkov, Rolf Ohlsson

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 73 citations in OpenAlex.

  1. Multiple Roles of dXNP and dADD1-International journal of molecular sciences · 2023
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  16. Does CTCF mediate between nuclear organization and gene expression?BioEssays : news and reviews in molecular, cellular and developmental biology · 2010
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Meena KanduriDepartment of Development & Genetics, Evolution Biology Centre, Uppsala University, S-752 36 Uppsala, Sweden.
Chandrasekhar Kanduri
Piero Mariano
Alexander A Vostrov
Wolfgang Quitschke
Victor Lobanenkov
Rolf Ohlsson
Uppsala University · SENational Institutes of Health · USState University of New York · USStony Brook University · US

Funding

Normal and Pathologic Functions of CTCF and Its Distinct Classes of DNA-targetsZIAAI000860 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LOBANENKOV, VICTOR · 2009 to 2025
$15.4M
Transcriptional Regulation Of Ctcf And Boris ExpressionZ01AI000860 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI LOBANENKOV, VICTOR · 2000 to 2008
$1.5M
ROLE OF TRANSCRIPTION FACTOR CTCF IN TUMOR DEVELOPMENTZ01AI000859 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI LOBANENKOV, VICTOR · 2000 to 2003
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6 · The paper itself

Abstract

The 5' region of the H19 gene harbors a methylation-sensitive chromatin insulator within an imprinting control region (ICR). Insertional mutagenesis in combination with episomal assays identified nucleosome positioning sequences (NPSs) that set the stage for the remarkably precise distribution of the four target sites for the chromatin insulator protein CTCF to nucleosome linker sequences in the H19 ICR. Changing positions of the NPSs resulted in loss of both CTCF target site occupancy and insulator function, suggesting that the NPSs optimize the fidelity of the insulator function. We propose that the NPSs ensure the fidelity of the repressed status of the maternal Igf2 allele during development by constitutively maintaining availability of the CTCF target sites.

Indexed as

Repressor ProteinsAnimalsCCCTC-Binding FactorCell LineChromatinConserved SequenceDNA-Binding ProteinsGenes, ReporterHumansLocus Control RegionMiceMutagenesis, InsertionalNucleosomesRNA, Long NoncodingRNA, UntranslatedTranscription FactorsCCCTC-Binding FactorChromatinCTCF protein, humanCtcf protein, mouseDNA-Binding ProteinsH19 long non-coding RNANucleosomesRepressor ProteinsRNA, Long NoncodingRNA, UntranslatedTranscription Factors

Identifiers

PMID11971967
PMCPMC133793
OpenAlexW2138952587

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.