Evidence map›Paper›PMID 11971142›Full record

ArticleThe Plant cell2002

Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA.

Richard Macknight, Meg Duroux, Rebecca Laurie, Paul Dijkwel, Gordon Simpson, Caroline Dean

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
20.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 255 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Biology · 2023
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  8. ExploringPlant direct · 2021
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  9. Article
  10. Beyond the Genetic Pathways, Flowering Regulation Complexity inInternational journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Autonomous Pathway:Plant physiology · 2020
    Article
  15. Article
  16. Article
  17. Review
  18. Genetics of alternative splicing evolution during sunflower domestication.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Review

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Richard MacknightDepartment of Cell and Developmental Biology, John Innes Centre, Colney Lane, Norwich NR4 7UH, United Kingdom.
Meg Duroux
Rebecca Laurie
Paul Dijkwel
Gordon Simpson
Caroline Dean
John Innes Centre · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Arabidopsis gene FCA encodes an RNA binding protein that functions to promote the floral transition. The FCA transcript is alternatively processed to yield four transcripts, the most abundant of which is polyadenylated within intron 3. We have analyzed the role of the alternative processing on the floral transition. The introduction of FCA intronless transgenes resulted in increased FCA protein levels and accelerated flowering, but no role in flowering was found for products of the shorter transcripts. The consequences of the alternative processing on the FCA expression pattern were determined using a series of translational FCA-beta-glucuronidase fusions. The inclusion of FCA genomic sequence containing the alternatively processed intron 3 restricted the expression of the transgene predominantly to shoot and root apices and young flower buds. Expression of this fusion also was delayed developmentally. Therefore, the alternative processing of the FCA transcript limits, both spatially and temporally, the amount of functional FCA protein. Expression in roots prompted an analysis of root development, which indicated that FCA functions more generally than in the control of the floral transition.

Indexed as

Alternative SplicingArabidopsisArabidopsis ProteinsBrassica napusEscherichia coliGene Expression Regulation, PlantGlucuronidaseIntronsMolecular Sequence DataMutationPhenotypePisum sativumPlant RootsPlants, Genetically ModifiedPlant StemsProtein BiosynthesisArabidopsis ProteinsFlowering time control protein FCA, ArabidopsisGlucuronidaseRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID11971142
PMCPMC150689
OpenAlexW2155336429

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.