Evidence map›Paper›PMID 11964388›Full record

ArticleEMBO reports2002

Regulation of mitochondrial D-loops by transcription factor A and single-stranded DNA-binding protein.

Chihiro Takamatsu, Shuyo Umeda, Takashi Ohsato, Tetsuji Ohno, Yoshito Abe, Atsushi Fukuoh, Hideo Shinagawa, Naotaka Hamasaki, Dongchon Kang

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 229 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. TFAM and Mitochondrial Protection in Diabetic Kidney Disease.Diabetes, metabolic syndrome and obesity : targets and therapy · 2024
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Assessing TFAM Binding to Human Mitochondrial DNA.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  17. Mitochondrial PARP1 regulates NADExperimental & molecular medicine · 2022
    Article
  18. Review
  19. Article
  20. Review

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Chihiro TakamatsuDepartment of Clinical Chemistry and Laboratory Medicine, Kyushu University Graduate School of Medical Sciences, Fukuoka 812-8582, Japan.
Shuyo Umeda
Takashi Ohsato
Tetsuji Ohno
Yoshito Abe
Atsushi Fukuoh
Hideo Shinagawa
Naotaka Hamasaki
Dongchon Kang
Kyushu University · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During replication, mitochondrial DNA (mtDNA) takes on a triple-stranded structure called a D-loop. Although their physiological roles are not understood, D-loops are implicated in replication and transcription of mtDNA. Little is known about the turnover of D-loops. We investigated the effects of mitochondrial transcription factor A (TFAM) and single-stranded DNA-binding protein (mtSSB) on D-loops. In human HeLa cells, TFAM and mtSSB are, respectively, 1700- and 3000-fold more abundant than mtDNA. This level of TFAM is two orders of magnitude higher than reported previously and is sufficient to wrap human mtDNA entirely. TFAM resolves D-loops in vitro if added in similar stoichiometries. mtSSB inhibits the resolution of mtDNA by TFAM but enhances resolution by RecG, a junction-specific helicase from Escherichia coli. Hence, mtSSB functions in both stabilization and resolution. We propose that TFAM and mtSSB are cooperatively involved in stabilizing D-loops and in the maintenance of mtDNA.

Indexed as

Mitochondrial ProteinsNuclear ProteinsTrans-ActivatorsXenopus ProteinsCell LineDNA-Binding ProteinsDNA, MitochondrialEscherichia coliEscherichia coli ProteinsHeLa CellsHumansNucleic Acid ConformationTranscription FactorsDNA-Binding ProteinsDNA, MitochondrialEscherichia coli ProteinsMitochondrial Proteinsmitochondrial transcription factor ANuclear ProteinsRecG protein, E coliTFAM protein, humanTrans-ActivatorsTranscription FactorsXenopus ProteinsXL-MTTFA protein, Xenopus

Identifiers

PMID11964388
PMCPMC1084112
OpenAlexW2036791811

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.