Evidence map›Paper›PMID 11956244›Full record

ArticleThe Journal of clinical investigation2002

Transcriptional induction of slit diaphragm genes by Lmx1b is required in podocyte differentiation.

Jeffrey H Miner, Roy Morello, Kaya L Andrews, Cong Li, Corinne Antignac, Andrey S Shaw, Brendan Lee

Open access · greenAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 149 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Quality assessment and refinement of chromatin accessibility data using a sequence-based predictive model.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Foxc2 is essential for podocyte function.Physiological reports · 2019
    Article
  12. Modeling congenital kidney diseases inDisease models & mechanisms · 2019
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Nail-patella syndrome.Pflugers Archiv : European journal of physiology · 2017
    Review
  19. Article
  20. Podocytes.F1000Research · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Jeffrey H MinerDepartment of Medicine, Renal Division, Washington University School of Medicine, 660 S Euclid Avenue, St. Louis, Missouri 63110, USA. minerj@pcg.wustl.edu
Roy Morello
Kaya L Andrews
Cong Li
Corinne Antignac
Andrey S Shaw
Brendan Lee
Washington University in St. Louis · USBaylor College of Medicine · USUniversité Paris Cité · FR

Funding

THE SKELETAL DYSPLASIASP01HD022657 · NICHD · CEDARS-SINAI MEDICAL CENTER · PI EYRE, DAVID R · 1987 to 2011
$17.0M
STRUCTURE AND FUNCTION OF CD2AP IN THE KIDNEYR01DK058366 · NIDDK · WASHINGTON UNIVERSITY · PI MINER, JEFFREY H · 2000 to 2019
$6.8M
ROLES OF LAMININ ALPHA CHAINS IN KIDNEYP50DK045181 · NIDDK · WASHINGTON UNIVERSITY · PI HAMMERMAN, MARC R · 1992 to 2002
$2.3M
COLLAGEN IV CHAINS IN KIDNEY DEVELOPMENT AND FUNCTIONR01DK053196 · NIDDK · WASHINGTON UNIVERSITY · PI MINER, JEFFREY H · 1998 to 2002
$482k
TRANSCRIPTIONAL REGULATORS IN CHONDROGENESISR01AR044738 · NIAMS · BAYLOR COLLEGE OF MEDICINE · PI LEE, BRENDAN HL · 2000 to 2002
$311k
NIAMS NIH HHS R01 AR 044738NICHD NIH HHS P01 HD 022657NICHD NIH HHS P01 HD022657NIDDK NIH HHS P50 DK 045181NIDDK NIH HHS R01 DK 053196NIDDK NIH HHS R01 DK 058366NIDDK NIH HHS R01 DK058366Telethon 494/B
6 · The paper itself

Abstract

LMX1B encodes a LIM-homeodomain transcription factor. Mutations in LMX1B cause nail-patella syndrome (NPS), an autosomal dominant disease with skeletal abnormalities, nail hypoplasia, and nephropathy. Expression of glomerular basement membrane (GBM) collagens is reduced in Lmx1b(-/-) mice, suggesting one basis for NPS nephropathy. Here, we show that Lmx1b(-/-) podocytes have reduced numbers of foot processes, are dysplastic, and lack typical slit diaphragms, indicating an arrest in development. Using antibodies to podocyte proteins important for podocyte function, we found that Lmx1b(-/-) podocytes express near-normal levels of nephrin, synaptopodin, ZO-1, alpha3 integrin, and GBM laminins. However, mRNA and protein levels for CD2AP and podocin were greatly reduced, suggesting a cooperative role for these molecules in foot process and slit diaphragm formation. We identified several LMX1B binding sites in the putative regulatory regions of both CD2AP and NPHS2 (podocin) and demonstrated that LMX1B binds to these sequences in vitro and can activate transcription through them in cotransfection assays. Thus, LMX1B regulates the expression of multiple podocyte genes critical for podocyte differentiation and function. Our results indicate that reduced levels of proteins associated with foot processes and the glomerular slit diaphragm likely contribute, along with reduced levels of GBM collagens, to the nephropathy associated with NPS.

Indexed as

AnimalsAnimals, NewbornBase SequenceCell DifferentiationGene ExpressionGenes, HomeoboxHeterozygoteHomeodomain ProteinsHomozygoteHumansIn Situ HybridizationKidney GlomerulusLIM-Homeodomain ProteinsMiceMice, KnockoutNail-Patella SyndromeHomeodomain ProteinsLIM homeobox transcription factor 1 betaLIM-Homeodomain ProteinsRNA, MessengerTranscription Factors

Identifiers

PMID11956244
PMCPMC150942
OpenAlexW2112128300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.