Evidence map›Paper›PMID 11953323›Full record

ArticleThe EMBO journal2002

Specific interaction of IP6 with human Ku70/80, the DNA-binding subunit of DNA-PK.

Les A Hanakahi, Stephen C West

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
17.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 106 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Neural Tube Defects and Folate Deficiency: Is DNA Repair Defective?International journal of molecular sciences · 2023
    Review
  6. Review
  7. Review
  8. Review
  9. The Multifaceted Roles of Ku70/80.International journal of molecular sciences · 2021
    Review
  10. Article
  11. Article
  12. Review
  13. InsPNature structural & molecular biology · 2019
    Article
  14. Nuclear Phosphoinositides: Their Regulation and Roles in Nuclear Functions.International journal of molecular sciences · 2019
    Review
  15. Article
  16. Article
  17. Profiling DNA damage-induced phosphorylation in budding yeast reveals diverse signaling networks.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Les A HanakahiCancer Research UK, London Research Institute, Clare Hall Laboratories, South Mimms, Hertfordshire EN6 3LD, UK.
Stephen C West
Cancer Research UK · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In eukaryotic cells, DNA double-strand breaks can be repaired by non-homologous end-joining, a process dependent upon Ku70/80, XRCC4 and DNA ligase IV. In mammals, this process also requires DNA-PK(cs), the catalytic subunit of the DNA-dependent protein kinase DNA-PK. Previously, inositol hexakisphosphate (IP6) was shown to be bound by DNA-PK and to stimulate DNA-PK-dependent end-joining in vitro. Here, we localize IP6 binding to the Ku70/80 subunits of DNA- PK, and show that DNA-PK(cs) alone exhibits no detectable affinity for IP6. Moreover, proteolysis mapping of Ku70/80 in the presence and absence of IP6 indicates that binding alters the conformation of the Ku70/80 heterodimer. The yeast homologue of Ku70/80, yKu70/80, fails to bind IP6, indicating that the function of IP6 in non-homologous end-joining, like that of DNA-PK(cs), is unique to the mammalian end-joining process.

Indexed as

Antigens, NuclearDNA HelicasesSaccharomyces cerevisiae ProteinsBinding SitesDimerizationDNA-Activated Protein KinaseDNA-Binding ProteinsHeLa CellsHumansKu AutoantigenNuclear ProteinsPhytic AcidProtein Serine-Threonine KinasesAntigens, NuclearDNA-Activated Protein KinaseDNA-Binding ProteinsDNA Helicaseshigh affinity DNA-binding factor, S cerevisiaeKu AutoantigenNuclear ProteinsPhytic AcidPRKDC protein, humanProtein Serine-Threonine KinasesSaccharomyces cerevisiae ProteinsXRCC5 protein, humanXrcc6 protein, humanYKU70 protein, S cerevisiae

Identifiers

PMID11953323
PMCPMC125973
OpenAlexW2067488984

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.