Evidence map›Paper›PMID 11943732›Full record

ArticleThe American journal of pathology2002

Diversity of genomic breakpoints in TFG-ALK translocations in anaplastic large cell lymphomas: identification of a new TFG-ALK(XL) chimeric gene with transforming activity.

Luis Hernández, Sílvia Beà, Beatriz Bellosillo, Magda Pinyol, Brunangelo Falini, Antonino Carbone, German Ott, Andreas Rosenwald, Alberto Fernández, Karen Pulford and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 105 citations in OpenAlex.

  1. Review
  2. Article
  3. Frontiers in oncology · 2023
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. ALK: a tyrosine kinase target for cancer therapy.Cold Spring Harbor molecular case studies · 2017
    Review
  13. Novel ALK inhibitors in clinical use and development.Journal of hematology & oncology · 2015
    Review
  14. Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 6 countries.

Luis HernándezCentro de Investigación delCáncer, Centro Superior de Investigaciones Científicas-University of Salamanca, Salamanca, Spain.
Sílvia Beà
Beatriz Bellosillo
Magda Pinyol
Brunangelo Falini
Antonino Carbone
German Ott
Andreas Rosenwald
Alberto Fernández
Karen Pulford
David Mason
Stephan W Morris
Eugenio Santos
Elias Campo
Universitat de Barcelona · ESJohn Radcliffe Hospital · GBSt. Jude Children's Research Hospital · USUniversidad de Salamanca · ESUniversity of Würzburg · DECentro di Riferimento Oncologico · ITUniversity of Perugia · IT

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
NPM-ALK AND ALK IN LYMPHOMA AND NORMAL DEVELOPMENTR01CA069129 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI MORRIS, STEPHAN W · 1996 to 2006
$2.0M
NCI NIH HHS CA21765NCI NIH HHS CA69129NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA069129
6 · The paper itself

Abstract

Anaplastic large cell lymphomas are associated with chromosomal aberrations involving the anaplastic lymphoma kinase (ALK) gene at 2p23 that result in the expression of novel chimeric ALK proteins with transforming properties. In most of these tumors, the t(2;5)(p23;q35) generates the NPM-ALK fusion gene. However, several studies have now demonstrated that genes other than NPM may be fused to the ALK gene. We have recently described two different ALK rearrangements involving the TRK-fused gene (TFG) in which the same portion of ALK was fused to different length fragments of the 5' TFG region. These two rearrangements encoded chimeric proteins of 85 kd (TFG-ALK(S)) and 97 kd (TFG-ALK(L)), respectively. In this study, we have identified a new ALK rearrangement in which the catalytic domain of ALK was fused to a larger fragment of the TFG gene (TFG-ALK(XL)), encoding for a fusion protein of 113 kd. Genomic analysis of these three TFG-ALK rearrangements revealed that the TFG breakpoints occur at introns 3, 4, and 5, respectively, whereas the ALK breakpoints always occur in the same intron. No homologous regions or known recombination sequences were found in these regions. Transfection experiments using NIH-3T3 fibroblasts showed a similar transforming efficiency of TFG-ALK variants compared with NPM-ALK. In addition, in common with NPM-ALK, the TFG-ALK proteins formed stable complexes with the signaling proteins Grb2, Shc, and PLC-gamma. In conclusion, these findings indicate that the TFG may use a variety of intronic breakpoints in ALK rearrangements generating fusion proteins of different molecular weights, but with similar transforming potential than NPM-ALK.

Indexed as

Adaptor Proteins, Signal TransducingAdaptor Proteins, Vesicular Transport3T3 CellsAnaplastic Lymphoma KinaseAnimalsBase SequenceChildChimeraFemaleGene RearrangementGenetic VariationGenomeGRB2 Adaptor ProteinHumansIsoenzymesLymphoma, Large B-Cell, DiffuseAdaptor Proteins, Signal TransducingAdaptor Proteins, Vesicular TransportALK protein, humanAlk protein, mouseAnaplastic Lymphoma KinaseGRB2 Adaptor ProteinGRB2 protein, humanGrb2 protein, mouseIsoenzymesPhospholipase C gammaProteinsProtein-Tyrosine KinasesReceptor Protein-Tyrosine KinasesSHC1 protein, humanShc1 protein, mouseShc Signaling Adaptor ProteinsSrc Homology 2 Domain-Containing, Transforming Protein 1TFG protein, humanTfg protein, mouseType C PhospholipasesVesicular Transport Proteins

Identifiers

PMID11943732
PMCPMC1867210
OpenAlexW93166486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.