Evidence map›Paper›PMID 11937627›Full record

ArticleNucleic acids research2002

Correlation between chromatin association and transcriptional regulation for the Act3p/Arp4 nuclear actin-related protein of Saccharomyces cerevisiae.

Masahiko Harata, Yan Zhang, David J Stillman, Daisuke Matsui, Yukako Oma, Katsuhiko Nishimori, Ryo Mochizuki

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  4. Natural Deep Eutectic Extracts of Propolis,Oxidative medicine and cellular longevity · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Chapter 5. Nuclear actin-related proteins in epigenetic control.International review of cell and molecular biology · 2009
    Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Masahiko HarataLaboratory of Molecular Biology, Department of Molecular and Cell Biology, Division of Life Science, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori-Amamiyamachi 1-1, Aoba-ku, Sendai 981-8555, Japan. mharata@biochem.tohoku.ac.jp
Yan Zhang
David J Stillman
Daisuke Matsui
Yukako Oma
Katsuhiko Nishimori
Ryo Mochizuki
Tohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Actin-related proteins (Arps), which share a basal structure with actin but have distinct functions, have been found in a wide variety of organisms. While their functions are not yet clear, some Arps are localized in the nucleus and are suggested to contribute to the regulation of transcription. An essential gene of Saccharomyces cerevisiae, Act3p/Arp4, encodes the first identified nuclear Arp, which has been shown to bind to core histones in vitro. Here we have analyzed the in vivo function of Act3p/Arp4 on the his4-912delta promoter. Chromatin immunoprecipitation assays show that Act3p/Arp4 is bound to the entire his4-912delta promoter region. Conditional act3/arp4 mutations affect transcription from the his4-912delta promoter, where decreased Act3p/Arp4 binding and a change in nuclease sensitivity of chromatin were observed, showing the involvement of Act3p/Arp4 in the regulation of gene expression through the organization of chromatin structure. Taken together with the presence of Act3p/Arp4 in chromatin remodeling and histone acetyltransferase complexes, it is suggested that Act3p/Arp4 functions in transcriptional regulation to recruit chromatin remodeling and histone acetyltransferase complexes onto chromatin.

Indexed as

ActinsAlcohol OxidoreductasesAminohydrolasesCentromereChromatinChromosomes, FungalDeoxyribonucleases, Type II Site-SpecificFungal ProteinsMicrococcal NucleaseMutationNuclear ProteinsPromoter Regions, GeneticPyrophosphatasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional ActivationActinsAlcohol OxidoreductasesAminohydrolasesArp4 protein, S cerevisiaeChromatinDeoxyribonucleases, Type II Site-SpecificFungal ProteinsGATC-specific type II deoxyribonucleasesHIS4 protein, S cerevisiaeMicrococcal NucleaseNuclear ProteinsPyrophosphatasesSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID11937627
PMCPMC113217
OpenAlexW2056599175

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.