Evidence map›Paper›PMID 11927565›Full record

ArticleThe EMBO journal2002

Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop.

Lionel Pintard, François Lecointe, Janusz M Bujnicki, Claire Bonnerot, Henri Grosjean, Bruno Lapeyre

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 173 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. RNA modifying enzymes shape tRNA biogenesis and function.The Journal of biological chemistry · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Transcriptional Reprogramming ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  12. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  13. Nanopore sequencing of internal 2'-PORNA (New York, N.Y.) · 2023
    Article
  14. Article
  15. Review
  16. A Simple Method for the Detection of Wybutosine-Modified tRNAMethods in molecular biology (Clifton, N.J.) · 2023
    Article
  17. Article
  18. Review
  19. TheRNA (New York, N.Y.) · 2022
    Article
  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Lionel PintardCentre de Recherche de Biochimie Macromoléculaire du CNRS, 1919 Route de Mende, F-34293 Montpellier cedex 5, France.
François Lecointe
Janusz M Bujnicki
Claire Bonnerot
Henri Grosjean
Bruno Lapeyre
Centre de Recherche en Biologie cellulaire de Montpellier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genome of Saccharomyces cerevisiae encodes three close homologues of the Escherichia coli 2'-O-rRNA methyltransferase FtsJ/RrmJ, designated Trm7p, Spb1p and Mrm2p. We present evidence that Trm7p methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop, both in vivo and in vitro. In a trm7Delta strain, which is viable but grows slowly, translation is impaired, thus indicating that these tRNA modifications could be important for translation efficiency. We discuss the emergence of a family of three 2'-O-RNA methyltransferases in Eukaryota and one in Prokaryota from a common ancestor. We propose that each eukaryotic enzyme is located in a different cell compartment, in which it would methylate a different RNA that can adopt a very similar secondary structure.

Indexed as

Amino Acid SequenceAnimalsAnticodonBase SequenceCatalysisCell Cycle ProteinsEscherichia coliEukaryotic CellsHumansMethyltransferasesMolecular Sequence DataMutagenesisNucleic Acid ConformationProtein BiosynthesisProtein Structure, TertiaryRecombinant Fusion ProteinsAnticodonCell Cycle ProteinsD-2-O-methylriboseMethyltransferasesRecombinant Fusion ProteinsRiboserlmE protein, E coliRNA, FungalRNA, MessengerRNA, TransferSaccharomyces cerevisiae ProteinsS-AdenosylmethionineTrm7 protein, S cerevisiaetRNA Methyltransferases

Identifiers

PMID11927565
PMCPMC125368
OpenAlexW2059346861

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.