Evidence map›Paper›PMID 11916871›Full record

ArticleBiophysical journal2002

Probing the proton channel and the retinal binding site of Natronobacterium pharaonis sensory rhodopsin II.

Johann P Klare, Georg Schmies, Igor Chizhov, Kazumi Shimono, Naoki Kamo, Martin Engelhard

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Johann P KlareMax-Planck-Institut für Molekulare Physiologie, Otto Hahn Strasse 11, D-44227 Dortmund, Germany.
Georg Schmies
Igor Chizhov
Kazumi Shimono
Naoki Kamo
Martin Engelhard
Max Planck Society · DEHokkaido University · JPMax Planck Institute of Molecular Physiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The sensory rhodopsin II from Natronobacterium pharaonis (NpSRII) was mutated to try to create functional properties characteristic of bacteriorhodopsin (BR), the proton pump from Halobacterium salinarum. Key residues from the cytoplasmic and extracellular proton transfer channel of BR as well as from the retinal binding site were chosen. The single site mutants L40T, F86D, P183E, and T204A did not display altered function as determined by the kinetics of their photocycles. However, the photocycle of each of the subsequent multisite mutations L40T/F86D, L40T/F86D/P183E, and L40T/F86D/P183E/T204A was quite different from that of the wild-type protein. The reprotonation of the Schiff base could be accelerated approximately 300- to 400-fold, to approximately two to three times faster than the corresponding reaction in BR. The greatest effect is observed for the quadruple mutant in which Thr-204 is replaced by Ala. This result indicates that mutations affecting conformational changes of the protein might be of decisive importance for the creation of BR-like functional properties.

Indexed as

HalorhodopsinsProtonsSensory RhodopsinsAlanineArchaeal ProteinsBinding SitesCarotenoidsCell MembraneCytoplasmDNAEscherichia coliHydrogen-Ion ConcentrationLasersLightLipid MetabolismModels, MolecularAlanineArchaeal ProteinsCarotenoidsDNAHalorhodopsinsProtonsRhodopsins, Microbialsensory rhodopsin II protein, archaealSensory RhodopsinsThreonine

Identifiers

PMID11916871
PMCPMC1302009
OpenAlexW2045416680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.