Evidence map›Paper›PMID 11909971›Full record

ArticleMolecular and cellular biology2002

Evidence that TAF-TATA box-binding protein interactions are required for activated transcription in mammalian cells.

Lisa S Martel, Helen J Brown, Arnold J Berk

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Lisa S MartelDepartment of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, Los Angeles, California, USA.
Helen J Brown
Arnold J Berk
Laboratory of Molecular Genetics · PL

Funding

TUMOR CELL SURFACES AND CHROMOSOMEST32CA009056 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gay M Crooks, David A. Nathanson · 1985 to 2026
$10.5M
BIOSYNTHESIS OF ADENOVIRUS EARLY RNASR37CA025235 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BERK, ARNOLD J · 1987 to 2011
$7.8M
BIOSYNTHESIS OF ADENOVIRUS EARLY RNASR01CA025235 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BERK, ARNOLD J · 1985 to 2016
$2.7M
NCI NIH HHS CA-09056NCI NIH HHS CA25235NCI NIH HHS R01 CA025235NCI NIH HHS R37 CA025235NCI NIH HHS T32 CA009056
6 · The paper itself

Abstract

Surfaces of human TATA box-binding protein (hsTBP) required for activated transcription in vivo were defined by constructing a library of surface residue substitution mutations and assaying them for their ability to support activated transcription in transient-transfection assays. In earlier work, three regions were identified where mutations inhibited activated transcription without interfering with TATA box DNA binding. One region is on the upstream surface of the N-terminal TBP repeat with respect to the direction of transcription and corresponds to the TBP surface that interacts with TFIIA. A second region on the stirrup of the C-terminal TBP repeat corresponds to the TFIIB-binding surface. Here we report that the third region where mutations inhibit activated transcription in mammalian cells, the convex surface of the N-terminal repeat, corresponds to a surface on TBP that interacts with hsTAF1, the major scaffold subunit of TFIID. Since mutations at the center of the hsTAF1-interacting region inhibit the ability of the protein to support activated transcription in vivo, these results are consistent with the conclusion that an interaction between hsTBP and TAF(II)s is required for activated transcription in mammalian cells.

Indexed as

Chromosomal Proteins, Non-HistoneAmino Acid SequenceAmino Acid SubstitutionBinding, CompetitiveBinding SitesDNA-Binding ProteinsHeLa CellsHistone ChaperonesHumansIn Vitro TechniquesModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedProtein ConformationProtein Structure, TertiaryRecombinant ProteinsChromosomal Proteins, Non-HistoneDNA-Binding ProteinsHistone ChaperonesRecombinant ProteinsRNA, MessengerSET protein, humanTATA-Box Binding ProteinTranscription FactorsTranscription Factors, TFIITranscription Factor TFIIATranscription Factor TFIIBTranscription Factor TFIID

Identifiers

PMID11909971
PMCPMC133715
OpenAlexW2150168095

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.