Evidence map›Paper›PMID 11904432›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

DNA-dependent protein kinase suppresses double-strand break-induced and spontaneous homologous recombination.

Chris Allen, Akihiro Kurimasa, Mark A Brenneman, David J Chen, Jac A Nickoloff

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 1 synthesis or guideline pooled it, 182 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Review
  5. Article
  6. Article
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  8. Article
  9. Acquired temozolomide resistance in MGMTCell death & disease · 2022
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  10. Therapeutic Targeting of DNA Damage Response in Cancer.International journal of molecular sciences · 2022
    Review
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  17. Article
  18. CRISPR-Cas9-guided oncogenic chromosomal translocations with conditional fusion protein expression in human mesenchymal cells.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  19. Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Chris AllenDepartment of Molecular Genetics and Microbiology, University of New Mexico School of Medicine, Albuquerque, NM 87131, USA.
Akihiro Kurimasa
Mark A Brenneman
David J Chen
Jac A Nickoloff
University of New Mexico · USLawrence Berkeley National Laboratory · US

Funding

MAMMILIAN DOUBLE STRAND BREAK AND RECOMBINATIONAL REPAIRR01CA077693 · NCI · UNIVERSITY OF NEW MEXICO · PI OSLEY, MARY ANN · 1999 to 2008
$2.4M
ROLES OF HUMAN RECOMBINATION GENES IN GENOME INSTABILITYR01CA074046 · NCI · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI CHEN, DAVID J · 1997 to 2001
$376k
NCI NIH HHS CA74046NCI NIH HHS CA77693NCI NIH HHS R01 CA077693
6 · The paper itself

Abstract

DNA-dependent protein kinase (DNA-PK), composed of Ku70, Ku80, and the catalytic subunit (DNA-PKcs), is involved in repairing double-strand breaks (DSBs) by nonhomologous end-joining (NHEJ). Certain proteins involved in NHEJ are also involved in DSB repair by homologous recombination (HR). To test the effects of DNA-PKcs on DSB-induced HR, we integrated neo direct repeat HR substrates carrying the I-SceI recognition sequence into DNA-PKcs-defective Chinese hamster ovary (V3) cells. The DNA-PKcs defect was complemented with a human DNA-PKcs cDNA. DSB-induced HR frequencies were 1.5- to 3-fold lower with DNA-PKcs complementation. In complemented and uncomplemented strains, all products arose by gene conversion without associated crossover, and average conversion tract lengths were similar. Suppression of DSB-induced HR in complemented cells probably reflects restoration of NHEJ, consistent with competition between HR and NHEJ during DSB repair. Interestingly, spontaneous HR rates were 1.6- to >3.5-fold lower with DNA-PKcs complementation. DNA-PKcs may suppress spontaneous HR through NHEJ of spontaneous DSBs, perhaps at stalled or blocked replication forks. Because replication protein A (RPA) is involved in both replication and HR, and is phosphorylated by DNA-PKcs, it is possible that the suppression of spontaneous HR by DNA-PKcs reflects regulation of replication-dependent HR by DNA-PKcs, perhaps by means of phosphorylation of RPA.

Indexed as

DNA-Binding ProteinsSequence Homology, Nucleic AcidAnimalsBlotting, WesternCell LineCricetinaeDNADNA-Activated Protein KinaseDNA DamageDNA RepairDNA ReplicationGene ConversionGenetic Complementation TestHumansModels, GeneticMutationDNADNA-Activated Protein KinaseDNA-Binding ProteinsNeomycinNuclear ProteinsPRKDC protein, humanProtein Serine-Threonine KinasesNon-programmatic

Identifiers

PMID11904432
PMCPMC122597
OpenAlexW2160532161

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.