Evidence map›Paper›PMID 11891286›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

A robust inducible-repressible promoter greatly facilitates gene knockouts, conditional expression, and overexpression of homologous and heterologous genes in Tetrahymena thermophila.

Yuhua Shang, Xiaoyuan Song, Josephine Bowen, Robert Corstanje, Yan Gao, Jacek Gaertig, Martin A Gorovsky

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 141 papers.

0numbers the graph read from it
0cells of the map it votes in
141citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

141 citing papers in PubMed, 233 citations in OpenAlex.

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81 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yuhua ShangDepartment of Biology, University of Rochester, Rochester, NY 14627, USA.
Xiaoyuan Song
Josephine Bowen
Robert Corstanje
Yan Gao
Jacek Gaertig
Martin A Gorovsky
University of Georgia · USUniversity of Rochester · US

Funding

CONTROL OF GENE ACTIVITY AND ORGANELLE BIOGENESISR01GM026973 · NIGMS · UNIVERSITY OF ROCHESTER · PI GOROVSKY, MARTIN A · 1985 to 2006
$2.0M
MECHANISMS OF FUNCTIONAL SPECIALIZATION OF MICROTUBULESR29GM054017 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI GAERTIG, JACEK · 1996 to 2000
$113k
NIGMS NIH HHS GM 26973NIGMS NIH HHS GM 54017NIGMS NIH HHS R01 GM026973
6 · The paper itself

Abstract

The Cd(2+)-inducible metallothionein (MTT1) gene was cloned from Tetrahymena thermophila. Northern blot analysis showed that MTT1 mRNA is not detectable in the absence of Cd(2+), is induced within 10 min of its addition, is expressed in proportion to its concentration, and rapidly disappears upon its withdrawal. Similarly, when the neo1 gene coding region flanked by the MTT1 gene noncoding sequences was used to disrupt the MTT1 locus, no transformants were observed in the absence of Cd(2+), and the number of transformants was proportional to increased Cd(2+) concentration. The neo3 cassette, in which the MTT1 promoter replaced the histone gene HHF1 promoter of the previously used neo2 cassette, transformed cells at much higher frequencies than neo2 and produced germ-line knockouts where neo2 had failed. Rescuing the progeny of a mating of gamma-tubulin gene, GTU1, knockout heterokaryons with a GTU1 gene inserted into the MTT1 locus yielded >75 times more transformants than rescuing with the wild-type GTU1 gene itself. When cells rescued with the MTT1-GTU1 chimeric gene were transferred to medium lacking Cd(2+), they stopped growing and had phenotypic changes indistinguishable from cells containing only disrupted GTU1 genes. Thus, it is now possible to create conditional lethal mutants and study the terminal phenotypes of null mutations for essential genes by replacing the endogenous gene with one under the control of the MTT1 promoter. The MTT1 promoter also resulted in approximately 30 times more overexpression of the IAG48[G1] surface antigen gene of the ciliate fish parasite Ichthyophthirius multifiliis than the highly expressed BTU1 promoter, accounting for approximately 1% of the total cell protein. Thus, the MTT1 promoter should enable routine over-expression of endogenous and foreign genes in Tetrahymena.

Indexed as

Gene DeletionGene Expression RegulationAnimalsAntigens, ProtozoanCadmiumDown-RegulationGene FrequencyGenes, EssentialGenes, LethalGenes, ProtozoanGenes, ReporterGerm-Line MutationHistonesMetallothioneinMolecular Sequence DataMutagenesis, InsertionalAntigens, ProtozoanCadmiumHistonesMetallothioneinNeomycinRNA, MessengerRNA, ProtozoanTubulin

Identifiers

PMID11891286
PMCPMC122593
OpenAlexW2083367733

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.