Evidence map›Paper›PMID 11891239›Full record

ArticlePlant physiology2002

Temperature-induced extended helix/random coil transitions in a group 1 late embryogenesis-abundant protein from soybean.

Jose L Soulages, Kangmin Kim, Christina Walters, John C Cushman

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 122 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Jose L SoulagesDepartment of Biochemistry and Molecular Biology, 355 Noble Research Center, Oklahoma State University, Stillwater, Oklahoma 74078-0454, USA.
Kangmin Kim
Christina Walters
John C Cushman
University of Nevada, Reno · USAgricultural Research Service - Plains Area · USOklahoma State University · US

Funding

Structure and Function of ApolipoproteinsR01GM055622 · NIGMS · OKLAHOMA STATE UNIVERSITY STILLWATER · PI SOULAGES, JOSE L. · 2004 to 2007
$929k
STRUCTURE/FUNCTION OF APOLIPOPROTEINSR29GM055622 · NIGMS · UNIVERSITY OF ARIZONA · PI SOULAGES, JOSE L. · 1997 to 2001
$210k
NIGMS NIH HHS GM 55622NIGMS NIH HHS R01 GM055622NIGMS NIH HHS R29 GM055622
6 · The paper itself

Abstract

Group 1 late embryogenesis-abundant (LEA) proteins are a subset of hydrophilins that are postulated to play important roles in protecting plant macromolecules from damage during freezing, desiccation, or osmotic stress. To better understand the putative functional roles of group 1 LEA proteins, we analyzed the structure of a group 1 LEA protein from soybean (Glycine max). Differential scanning calorimetry of the purified, recombinant protein demonstrated that the protein assumed a largely unstructured state in solution. In the presence of trifluoroethanol (50% [w/v]), the protein acquired a 30% alpha-helical content, indicating that the polypeptide is highly restricted to adopt alpha-helical structures. In the presence of sodium dodecyl sulfate (1% [w/v]), 8% of the polypeptide chain adopted an alpha-helical structure. However, incubation with phospholipids showed no effect on the protein structure. Ultraviolet absorption and circular dichroism spectroscopy revealed that the protein existed in equilibrium between two conformational states. Ultraviolet absorption spectroscopy studies also showed that the protein became more hydrated upon heating. Furthermore, circular dichroism spectral measurements indicated that a minimum of 14% of amino acid residues existed in a solvent-exposed, left-handed extended helical or poly (L-proline)-type (PII) conformation at 20 degrees C with the remainder of the protein being unstructured. The content of PII-like structure increased as temperature was lowered. We hypothesize that by favoring the adoption of PII structure, instead of the formation of alpha-helical or beta-sheet structures, group 1 LEA proteins retain a high content of surface area available for interaction with the solvent. This feature could constitute the basis of a potential role of LEA proteins in preventing freezing, desiccation, or osmotic stress damage.

Indexed as

Circular DichroismCloning, MolecularEscherichia coliGene ExpressionGlycine maxLiposomesOsmotic PressurePhospholipidsPlant ProteinsProtein Structure, SecondaryRecombinant ProteinsSpectrophotometry, UltravioletTemperatureTrifluoroethanolWaterlate embryogenesis abundant protein, plantLiposomesPhospholipidsPlant ProteinsRecombinant ProteinsTrifluoroethanolWater

Identifiers

PMID11891239
PMCPMC152196
OpenAlexW2162183271

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.