Evidence map›Paper›PMID 11889044›Full record

ArticleThe EMBO journal2002

In vivo repression of an erythroid-specific gene by distinct corepressor complexes.

Luc E G Rietveld, Eric Caldenhoven, Hendrik G Stunnenberg

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
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  3. Review
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  5. Article
  6. Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  7. Specialized and redundant roles of TBP and a vertebrate-specific TBP paralog in embryonic gene regulation in Xenopus.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Luc E G RietveldDepartment of Molecular Biology, NCMLS 191, University of Nijmegen, PO Box 9101, 6500 HB Nijmegen, The Netherlands.
Eric Caldenhoven
Hendrik G Stunnenberg
Radboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To assess the mechanisms of repression of the erythroid-specific carbonic anhydrase II (CAII) locus we used chromatin immunoprecipitation and show that an NCoR-histone deacetylase (HDAC)3 complex is recruited by the nuclear receptor v-ErbA to the intronic HS2 enhancer turning it into a potent silencer. Furthermore we demonstrate that efficient CAII silencing requires binding of a MeCP2-targeted HDAC-containing corepressor complex to the hypermethylated CpG-island at the promoter. Activation of transcription by either AZAdC or thyroid hormone results in loss of one of the two corepressor complexes. Thyroid hormone further replaces the enhancer-bound NCoR-corepressor complex by the TRAP220 coactivator. Treatment with the HDAC inhibitor trichostatin A (TSA) causes activation of CAII transcription and histone H3 and H4 hyperacetylation at the enhancer, apparently without affecting binding of the two corepressor complexes. Unexpectedly, histone H3 and H4 at the fully repressed promoter are already hyperacetylated despite the close apposition of the MeCP2-targeted HDAC complex. Acetylation of histone H4, but not H3, at the promoter is moderately increased following TSA treatment. Our data suggest that the hyperacetylated but repressed CAII promoter is (partially) remodeled and primed for activation in v-ErbA-transformed cells.

Indexed as

Chromosomal Proteins, Non-HistoneCpG IslandsGene Expression Regulation, EnzymologicTranscriptional ActivationAcetylationCarbonic Anhydrase IICell Line, TransformedDNA-Binding ProteinsHistone Deacetylase 3Histone DeacetylasesHumansMethyl-CpG-Binding Protein 2Nuclear ProteinsNuclear Receptor Co-Repressor 1Oncogene Proteins v-erbAPromoter Regions, GeneticCarbonic Anhydrase IIChromosomal Proteins, Non-HistoneDNA-Binding ProteinsHistone Deacetylase 3Histone DeacetylasesMECP2 protein, humanMethyl-CpG-Binding Protein 2NCOR1 protein, humanNuclear ProteinsNuclear Receptor Co-Repressor 1Oncogene Proteins v-erbARepressor ProteinsTriiodothyronine

Identifiers

PMID11889044
PMCPMC125357
OpenAlexW2118176742

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.