Evidence map›Paper›PMID 11889039›Full record

ArticleThe EMBO journal2002

Arabidopsis FHY3 defines a key phytochrome A signaling component directly interacting with its homologous partner FAR1.

Haiyang Wang, Xing Wang Deng

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
12.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 165 citations in OpenAlex.

  1. Review
  2. Genome-Wide Analysis Reveals the Roles ofInternational journal of molecular sciences · 2026
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  3. ThePlants (Basel, Switzerland) · 2026
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  10. Genome-Wide Identification and Expression Analyses of theCurrent issues in molecular biology · 2024
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  13. Identification of genetic loci associated with five agronomic traits in alfalfa using multi-environment trials.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  14. Article
  15. Article
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  18. Dual Role for FHY3 in Light Input to the Clock.Frontiers in plant science · 2022
    Article
  19. Genome-Wide Identification and Expression ofFrontiers in plant science · 2022
    Article
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Haiyang WangDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520-8104, USA.
Xing Wang Deng
Yale University · US

Funding

Analysis of a Light-Regulated Development SwitchR37GM047850 · NIGMS · YALE UNIVERSITY · PI DENG, XING WANG · 2004 to 2013
$5.7M
LIGHT SIGNAL TRANDUCTION IN ARABIDOPSISR01GM047850 · NIGMS · YALE UNIVERSITY · PI WEI, NING · 1996 to 2018
$4.1M
ROLE OF FIN219 IN PHYTOCHROME A SIGNALINGF32GM020540 · NIGMS · YALE UNIVERSITY · PI WANG, HAIYANG · 2000 to 2001
$80k
LIGHT SIGNAL TRANSDUCTION IN ARABIDOPSISR29GM047850 · NIGMS · YALE UNIVERSITY · PI DENG, XING WANG · 1992 to 1995
–
NIGMS NIH HHS 1-F32-GM20540-01NIGMS NIH HHS F32 GM020540NIGMS NIH HHS GM47850NIGMS NIH HHS R01 GM047850NIGMS NIH HHS R37 GM047850
6 · The paper itself

Abstract

In Arabidopsis, phytochrome A (phyA) is the primary photoreceptor mediating various plant responses to far-red (FR) light. Here we show that phyA signaling involves a combinatorial action of downstream intermediates, which controls overlapping yet distinctive sets of FR responses. FHY3 is a prominent phyA signaling intermediate sharing structural similarity to FAR1, a previously identified phyA signaling component. The fhy3 and far1 mutants display similar yet distinctive defects in phyA signaling; however, overexpression of either FHY3 or FAR1 suppresses the mutant phenotype of both genes. Moreover, overexpression of partial fragments of FHY3 can cause a dominant-negative interference phenotype on phyA signaling that is stronger than those of the fhy3 or far1 null mutants. Further, we demonstrate that FHY3 and FAR1 are capable of homo- and hetero-interaction. Our data indicate that FHY3, together with FAR1, defines a key module in a signaling network underlying phyA-mediated FR light responses.

Indexed as

Signal TransductionAllelesAmino Acid SequenceArabidopsisArabidopsis ProteinsCell NucleusGene Expression Regulation, PlantGenes, PlantLightMolecular Sequence DataMutagenesisNuclear ProteinsPhenotypePhotosynthetic Reaction Center Complex ProteinsPhytochromePhytochrome AArabidopsis ProteinsFAR1 protein, ArabidopsisFHY3 protein, ArabidopsisNuclear ProteinsPhotosynthetic Reaction Center Complex ProteinsPHYA protein, ArabidopsisPhytochromePhytochrome A

Identifiers

PMID11889039
PMCPMC125923
OpenAlexW2136218783

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.