Evidence map›Paper›PMID 11889037›Full record

ArticleThe EMBO journal2002

A crystallographic view of interactions between Dbs and Cdc42: PH domain-assisted guanine nucleotide exchange.

Kent L Rossman, David K Worthylake, Jason T Snyder, David P Siderovski, Sharon L Campbell, John Sondek

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 220 citations in OpenAlex.

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  6. Dispensable role of Rac1 and Rac3 after cochlear hair cell specification.Journal of molecular medicine (Berlin, Germany) · 2023
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  10. GαThe Journal of biological chemistry · 2020
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  13. Targeting Rac and Cdc42 GEFs in Metastatic Cancer.Frontiers in cell and developmental biology · 2020
    Review
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  15. Review
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  19. Article
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kent L RossmanDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA.
David K Worthylake
Jason T Snyder
David P Siderovski
Sharon L Campbell
John Sondek
University of North Carolina at Chapel Hill · USUNC Lineberger Comprehensive Cancer Center

Funding

Tiam1, a prototypical Rho-family GEFR01GM062299 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SONDEK, JOHN E · 2001 to 2011
$2.3M
NIGMS NIH HHS GM62299NIGMS NIH HHS R01 GM062299Wellcome Trust
6 · The paper itself

Abstract

Dbl-related oncoproteins are guanine nucleotide exchange factors (GEFs) specific for Rho guanosine triphosphatases (GTPases) and invariably possess tandem Dbl (DH) and pleckstrin homology (PH) domains. While it is known that the DH domain is the principal catalytic subunit, recent biochemical data indicate that for some Dbl-family proteins, such as Dbs and Trio, PH domains may cooperate with their associated DH domains in promoting guanine nucleotide exchange of Rho GTPases. In order to gain an understanding of the involvement of these PH domains in guanine nucleotide exchange, we have determined the crystal structure of a DH/PH fragment from Dbs in complex with Cdc42. The complex features the PH domain in a unique conformation distinct from the PH domains in the related structures of Sos1 and Tiam1.Rac1. Consequently, the Dbs PH domain participates with the DH domain in binding Cdc42, primarily through a set of interactions involving switch 2 of the GTPase. Comparative sequence analysis suggests that a subset of Dbl-family proteins will utilize their PH domains similarly to Dbs.

Indexed as

Amino Acid SequenceAnimalscdc42 GTP-Binding ProteinCrystallography, X-RayGuanine Nucleotide Exchange FactorsMiceModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedProtein Structure, TertiaryRho Guanine Nucleotide Exchange FactorsSequence Homology, Amino Acidcdc42 GTP-Binding ProteinGuanine Nucleotide Exchange FactorsMcf2l protein, mouseRho Guanine Nucleotide Exchange Factors

Identifiers

PMID11889037
PMCPMC125919
OpenAlexW2085082922

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.