Evidence map›Paper›PMID 11884634›Full record

ArticleNucleic acids research2002

Methylation of adenine in the nuclear DNA of Tetrahymena is internucleosomal and independent of histone H1.

Kathleen M Karrer, Teresa A VanNuland

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Shaping eukaryotic epigenetic systems by horizontal gene transfer.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  4. Article
  5. Review
  6. N6-methyladenine: A Rare and Dynamic DNA Mark.Advances in experimental medicine and biology · 2022
    Article
  7. Review
  8. Programmed genome rearrangements in ciliates.Cellular and molecular life sciences : CMLS · 2020
    Review
  9. Article
  10. Article
  11. Epigenetic DNA Modification NJournal of the American Chemical Society · 2017
    Article
  12. N6-Methyladenine: A Conserved and Dynamic DNA Mark.Advances in experimental medicine and biology · 2016
    Review
  13. DNA N(6)-methyladenine: a new epigenetic mark in eukaryotes?Nature reviews. Molecular cell biology · 2015
    Review
  14. N6-methyladenine: the other methylated base of DNA.BioEssays : news and reviews in molecular, cellular and developmental biology · 2006
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kathleen M KarrerDepartment of Biology, Wehr Life Sciences, Marquette University, PO Box 1881, Milwaukee, WI 53201-1881, USA. kathleen.karrer@marquette.edu
Teresa A VanNuland
Marquette University · US

Funding

NIGMS NIH HHS GM52626
6 · The paper itself

Abstract

There are about 50 copies of each chromosome in the somatic macronucleus of the ciliated protozoan TETRAHYMENA: Approximately 0.8% of the adenine residues in the macronuclear DNA of Tetrahymena are methylated to N6-methyladenine. The degree of methylation varies between sites from a very low percentage to >90%. In this study a correlation was found between nucleosome positioning and DNA methylation. Eight GATC sites with different levels of methylation were examined. There was a direct correlation between the degree of methylation and proximity to linker DNA at these sites. Although methylation occurs preferentially in linker DNA, the patterns and extent of methylation in a histone H1 knockout strain were virtually indistinguishable from those in wild-type cells.

Indexed as

DNA MethylationAdenineAdenine NucleotidesAnimalsBase SequenceCell NucleusDNA, ProtozoanGene DeletionHistonesMolecular Sequence DataNucleosomesTetrahymena6-methyladenineAdenineAdenine NucleotidesDNA, ProtozoanHistonesNucleosomes

Identifiers

PMID11884634
PMCPMC101364
OpenAlexW2154376743

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.