Evidence map›Paper›PMID 11884592›Full record

ArticleMolecular and cellular biology2002

Partial reconstitution of human DNA mismatch repair in vitro: characterization of the role of human replication protein A.

Cecilia Ramilo, Liya Gu, Shuangli Guo, Xiping Zhang, Steve M Patrick, John J Turchi, Guo-Min Li

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 90 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Unboxing the molecular modalities of mutagens in cancer.Environmental science and pollution research international · 2022
    Review
  5. Review
  6. Review
  7. Article
  8. Mechanisms in E. coli and Human Mismatch Repair (Nobel Lecture).Angewandte Chemie (International ed. in English) · 2016
    Review
  9. Dynamic control of strand excision during human DNA mismatch repair.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Review
  11. Chromosomal directionality of DNA mismatch repair in Escherichia coli.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  12. Phosphorylation of PCNA by EGFR inhibits mismatch repair and promotes misincorporation during DNA synthesis.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Repair-specific functions of replication protein A.The Journal of biological chemistry · 2012
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Cecilia RamiloDepartment of Pathology and Laboratory Medicine, Lucille P. Markey Cancer Center, University of Kentucky Medical Center, Lexington, Kentucky 40536, USA.
Liya Gu
Shuangli Guo
Xiping Zhang
Steve M Patrick
John J Turchi
Guo-Min Li
Markey Cancer Center · USWright State University · USUniversity of Kentucky · US

Funding

Validation of RPA as a Target for Cancer ChemotherapyR01CA082741 · NCI · WRIGHT STATE UNIVERSITY · PI TURCHI, JOHN J. · 2000 to 2011
$2.3M
ROLE OF MISMATCH REPAIR IN SPORADIC TUMOR SUPPRESSIONR01CA085377 · NCI · UNIVERSITY OF KENTUCKY · PI LI, GUO-MIN · 2001 to 2004
$633k
MOLECULAR MECHANISM OF MAMMALIAN MISMATCH REPAIRR55CA082604 · NCI · UNIVERSITY OF KENTUCKY · PI LI, GUO-MIN · 1999 to 1999
–
NCI NIH HHS CA82604NCI NIH HHS CA82741NCI NIH HHS CA85377NCI NIH HHS R01 CA082741NCI NIH HHS R01 CA085377
6 · The paper itself

Abstract

DNA mismatch repair (MMR) is a critical genome-stabilization system. However, the molecular mechanism of MMR in human cells remains obscure because many of the components have not yet been identified. Using a functional in vitro reconstitution system, this study identified three HeLa cell fractions essential for in vitro MMR. These fractions divide human MMR into two distinct stages: mismatch-provoked excision and repair synthesis. In vitro dissection of the MMR reaction and crucial intermediates elucidated biochemical functions of individual fractions in human MMR and identified hitherto unknown functions of human replication protein A (hRPA) in MMR. Thus, one fraction carries out nick-directed and mismatch-dependent excision; the second carries out DNA repair synthesis and DNA ligation; and the third provides hRPA, which plays multiple roles in human MMR by protecting the template DNA strand from degradation, enhancing repair excision, and facilitating repair synthesis. It is anticipated that further analysis of these fractions will identify additional MMR components and enable the complete reconstitution of the human MMR pathway with purified proteins.

Indexed as

Base Pair MismatchBlotting, WesternCell ExtractsCell-Free SystemCell NucleusDNADNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA LigasesDNA RepairHeLa CellsHumansReplication Protein ATemplates, GeneticCell ExtractsDNADNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA LigasesReplication Protein ARPA1 protein, human

Identifiers

PMID11884592
PMCPMC133689
OpenAlexW2146335112

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.