Evidence map›Paper›PMID 11872716›Full record

ArticleJournal of bacteriology2002

RecA Protein from the extremely radioresistant bacterium Deinococcus radiodurans: expression, purification, and characterization.

Jong-Il Kim, Ajay K Sharma, Stephen N Abbott, Elizabeth A Wood, David W Dwyer, Aaron Jambura, Kenneth W Minton, Ross B Inman, Michael J Daly, Michael M Cox

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Radiation resistance in thermophiles: mechanisms and applications.World journal of microbiology & biotechnology · 2017
    Review
  10. Article
  11. Article
  12. Article
  13. A Decade of Biochemical and Structural Studies of the DNA Repair Machinery ofComputational and structural biotechnology journal · 2016
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jong-Il KimDepartment of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.
Ajay K Sharma
Stephen N Abbott
Elizabeth A Wood
David W Dwyer
Aaron Jambura
Kenneth W Minton
Ross B Inman
Michael J Daly
Michael M Cox
Uniformed Services University of the Health Sciences · USUniversity of Wisconsin–Madison · US

Funding

THE BIOCHEMISTRY OF GENETIC RECOMBINATION/RECA PROTEINR01GM032335 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COX, MICHAEL M. · 1985 to 2014
$6.8M
Mechanisms and applications of recombinational DNA repairU01GM032335 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COX, MICHAEL M. · 2015 to 2018
$1.7M
STRUCTURE AND REPLICATION OF DNAR01GM014711 · NIGMS · UNIVERSITY OF WISCONSIN MADISON · PI INMAN, ROSS B · 1985 to 2000
$219k
NIGMS NIH HHS GM14711-33NIGMS NIH HHS GM32335-18NIGMS NIH HHS GM39933-09NIGMS NIH HHS R01 GM032335NIGMS NIH HHS U01 GM032335
6 · The paper itself

Abstract

The RecA protein of Deinococcus radiodurans (RecA(Dr)) is essential for the extreme radiation resistance of this organism. The RecA(Dr) protein has been cloned and expressed in Escherichia coli and purified from this host. In some respects, the RecA(Dr) protein and the E. coli RecA (RecA(Ec)) proteins are close functional homologues. RecA(Dr) forms filaments on single-stranded DNA (ssDNA) that are similar to those formed by the RecA(Ec). The RecA(Dr) protein hydrolyzes ATP and dATP and promotes DNA strand exchange reactions. DNA strand exchange is greatly facilitated by the E. coli SSB protein. As is the case with the E. coli RecA protein, the use of dATP as a cofactor permits more facile displacement of bound SSB protein from ssDNA. However, there are important differences as well. The RecA(Dr) protein promotes ATP- and dATP-dependent reactions with distinctly different pH profiles. Although dATP is hydrolyzed at approximately the same rate at pHs 7.5 and 8.1, dATP supports an efficient DNA strand exchange only at pH 8.1. At both pHs, ATP supports efficient DNA strand exchange through heterologous insertions but dATP does not. Thus, dATP enhances the binding of RecA(Dr) protein to ssDNA and the displacement of ssDNA binding protein, but the hydrolysis of dATP is poorly coupled to DNA strand exchange. The RecA(Dr) protein thus may offer new insights into the role of ATP hydrolysis in the DNA strand exchange reactions promoted by the bacterial RecA proteins. In addition, the RecA(Dr) protein binds much better to duplex DNA than the RecA(Ec) protein, binding preferentially to double-stranded DNA (dsDNA) even when ssDNA is present in the solutions. This may be of significance in the pathways for dsDNA break repair in Deinococcus.

Indexed as

Adenosine TriphosphateDeoxyadenine NucleotidesDNA-Binding ProteinsDNA, Single-StrandedEscherichia coliGenetic VectorsGram-Positive CocciHydrogen-Ion ConcentrationProtein BindingRec A RecombinasesRecombinant Proteins2'-deoxyadenosine triphosphateAdenosine TriphosphateDeoxyadenine NucleotidesDNA-Binding ProteinsDNA, Single-StrandedRec A RecombinasesRecombinant Proteins

Identifiers

PMID11872716
PMCPMC134872
OpenAlexW2112855981

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.