Evidence map›Paper›PMID 11872710›Full record

ArticleJournal of bacteriology2002

Phenotypic selection and phase variation occur during alfalfa root colonization by Pseudomonas fluorescens F113.

María Sánchez-Contreras, Marta Martín, Marta Villacieros, Fergal O'Gara, Ildefonso Bonilla, Rafael Rivilla

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 151 citations in OpenAlex.

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  8. Multiple Pathways Impact Swarming Motility ofbioRxiv : the preprint server for biology · 2024
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  9. Influence of phenotypic variation ofFrontiers in microbiology · 2024
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  10. Evaluation of Siderophores Generated byPlants (Basel, Switzerland) · 2023
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  11. Adaption ofMicroorganisms · 2023
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  17. Rhizosphere plant-microbe interactions under water stress.Advances in applied microbiology · 2021
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  19. The Evanescent GacS Signal.Microorganisms · 2020
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  20. Journal of bacteriology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

María Sánchez-ContrerasDepartamento de Biología, Universidad Autónoma de Madrid, Madrid, Spain.
Marta Martín
Marta Villacieros
Fergal O'Gara
Ildefonso Bonilla
Rafael Rivilla
Universidad Autónoma de Madrid · ESUniversity College Cork · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During colonization of the alfalfa rhizosphere, Pseudomonas fluorescens F113 undergoes phenotypic variation, resulting in the appearance of colonies with different morphology. Among phenotypic variants, three isolates, C, F, and S were selected, with the C variant showing colony morphology identical to that of the inoculated wild-type strain and F and S having a translucent and diffuse morphology. Phenotypic variants F and S were shown to preferentially colonize distal parts of the roots and showed alterations in motility, swimming faster than the C variant and swarming under conditions that did not allow swarming of the C variant. The motility behavior correlated with overproduction of the fliC-encoded protein flagellin but not with hyperflagellation. Flagella of the F and S variants were several times longer than those of the C variant, and overproduction of flagellin was regulated at the transcriptional level. Variant F showed alterations in traits that have been shown to be important for rhizosphere colonization, such as siderophore, cyanide, and exoprotease production, and these phenotypes were complemented by a cloned gacA. Sequence analysis of the gacA alelle in variant F suggested selection of the phenotype in the rhizosphere. Variant F was also affected in other phenotypes, such as lipopolysaccharide structure and flocculation in unshaken liquid medium, which were not complemented by the gacA or gacS gene. Mutation of the F113 sss gene, encoding a site-specific recombinase, showed that most of the phenotypic variation was due to the activity of this recombinase, indicating that phase variation occurs during rhizosphere colonization.

Indexed as

Pseudomonas fluorescensAllelesBacterial Outer Membrane ProteinsBacterial ProteinsDNA NucleotidyltransferasesFlagellinGenetic VariationMedicago sativaMolecular Sequence DataPhenotypePlant RootsRecombinasesSelection, GeneticTranscription, GeneticBacterial Outer Membrane ProteinsBacterial ProteinsDNA NucleotidyltransferasesFlagellinFLP recombinaseGacA protein, BacteriaRecombinases

Identifiers

PMID11872710
PMCPMC134892
OpenAlexW2117352243

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.