Evidence map›Paper›PMID 11867717›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

Experimentally based model of a complex between a snake toxin and the alpha 7 nicotinic receptor.

Carole Fruchart-Gaillard, Bernard Gilquin, Stephanie Antil-Delbeke, Nicolas Le Novère, Toru Tamiya, Pierre-Jean Corringer, Jean-Pierre Changeux, André Ménez, Denis Servent

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 120 citations in OpenAlex.

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  16. Crystallization of recombinant green mamba ρ-Da1a toxin during a lyophilization procedure and its structure determination.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Carole Fruchart-GaillardCommissariat à l'Energie Atomique, Département d'Ingénierie et d'Etudes des Protéines, 91191 Gif-sur-Yvette Cedex, France.
Bernard Gilquin
Stephanie Antil-Delbeke
Nicolas Le Novère
Toru Tamiya
Pierre-Jean Corringer
Jean-Pierre Changeux
André Ménez
Denis Servent
Centre National de la Recherche Scientifique · FRInstitut Pasteur · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To understand how snake neurotoxins interact with nicotinic acetylcholine receptors, we have elaborated an experimentally based model of the alpha-cobratoxin-alpha7 receptor complex. This model was achieved by using (i) a three-dimensional model of the alpha7 extracellular domain derived from the crystallographic structure of the homologous acetylcholine-binding protein, (ii) the previously solved x-ray structure of the toxin, and (iii) nine pairs of residues identified by cycle-mutant experiments to make contacts between the alpha-cobratoxin and alpha7 receptor. Because the receptor loop F occludes entrance of the toxin binding pocket, we submitted this loop to a dynamics simulation and selected a conformation that allowed the toxin to reach its binding site. The three-dimensional structure of the toxin-receptor complex model was validated a posteriori by an additional double-mutant experiment. The model shows that the toxin interacts perpendicularly to the receptor axis, in an equatorial position of the extracellular domain. The tip of the toxin central loop plugs into the receptor between two subunits, just below the functional receptor loop C, the C-terminal tail of the toxin making adjacent additional interactions at the receptor surface. The receptor establishes major contacts with the toxin by its loop C, which is assisted by principal (loops A and B) and complementary (loops D, F, and 1) functional regions. This model explains the antagonistic properties of the toxin toward the neuronal receptor and opens the way to the design of new antagonists.

Indexed as

Computer SimulationModels, Molecularalpha7 Nicotinic Acetylcholine ReceptorAmino Acid SequenceAnimalsBinding SitesCell LineCobra Neurotoxin ProteinsElapidaeHumansMolecular Sequence DataMutagenesisProtein Structure, TertiaryReceptors, Nicotinicalpha7 Nicotinic Acetylcholine Receptoralpha-cobratoxinChrna7 protein, humanCobra Neurotoxin ProteinsReceptors, Nicotinic

Identifiers

PMID11867717
PMCPMC122499
OpenAlexW2013465250

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.