Evidence map›Paper›PMID 11867707›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

Conserved regulation of the lymphocyte-specific expression of lck in the Fugu and mammals.

Sydney Brenner, Byrappa Venkatesh, Wai Ho Yap, Chih-Fong Chou, Alice Tay, Sathivel Ponniah, Yue Wang, Y H Tan

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 57 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Sydney BrennerInstitute of Molecular and Cell Biology, 30 Medical Drive, Singapore 117609, USA.
Byrappa Venkatesh
Wai Ho Yap
Chih-Fong Chou
Alice Tay
Sathivel Ponniah
Yue Wang
Y H Tan
Institute of Molecular and Cell Biology · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The lck gene encodes a lymphocyte-specific protein-tyrosine kinase that is implicated in T cell maturation and signaling. In mammals, the transcription of the lck gene is regulated by two independent promoters, the proximal promoter, which is active in thymocytes, and the distal promoter, which dominates in mature T cells. In the human and mouse lck gene loci, the two promoter elements are separated by at least 40 kb and 10 kb, respectively. In this study, we have cloned and sequenced 60 kb from the pufferfish (Fugu rubripes) lck locus. The promoter region of the Fugu lck spans only 4.2 kb and contains a proximal and a distal promoter in the 2.3-kb region adjacent to the coding sequence. By generating transgenic mice, we have demonstrated that the compact promoter of the Fugu lck contains regulatory elements that direct expression to lymphoid organs of mice. We were able to localize the regulatory elements to a short region of 830 bp without losing specificity to cultured human T cell line. These results show that the basic mechanisms that mediate lymphocyte-specific expression are conserved between teleosts and mammals. The short promoter of the Fugu lck isolated by us offers a powerful tool for labeling T cells, targeting expression, and manipulating T cell activity in fishes as well as in mammals.

Indexed as

Conserved SequenceGene Expression RegulationPromoter Regions, GeneticAmino Acid SequenceAnimalsCell Line, TransformedCosmidsGene Expression ProfilingGenes, ReporterGreen Fluorescent ProteinsHumansLuminescent ProteinsLymphocyte Specific Protein Tyrosine Kinase p56(lck)MammalsMiceMice, TransgenicGreen Fluorescent ProteinsLuminescent ProteinsLymphocyte Specific Protein Tyrosine Kinase p56(lck)

Identifiers

PMID11867707
PMCPMC122451
OpenAlexW2024620417

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.