Evidence map›Paper›PMID 11861848›Full record

ArticleJournal of virology2002

Ty3 integrase is required for initiation of reverse transcription.

M Henrietta Nymark-McMahon, Nadejda S Beliakova-Bethell, Jean-Luc Darlix, Stuart F J Le Grice, Suzanne B Sandmeyer

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  15. Retroviral reverse transcriptases.Cellular and molecular life sciences : CMLS · 2010
    Review
  16. Article
  17. Article
  18. Review
  19. Structural variability of Tvv1 grapevine retrotransposons can be caused by illegitimate recombination.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

M Henrietta Nymark-McMahonDepartment of Biological Chemistry, College of Medicine, University of California, Irvine, California 92697, USA.
Nadejda S Beliakova-Bethell
Jean-Luc Darlix
Stuart F J Le Grice
Suzanne B Sandmeyer
University of California, Irvine · USFrederick National Laboratory for Cancer Research · USInserm · FR

Funding

Ty3 Viruslike Particle Morphogenesis and Host InteractionsR01GM033281 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 1985 to 2013
$4.7M
NIGMS NIH HHS GM33281NIGMS NIH HHS R01 GM033281
6 · The paper itself

Abstract

The integrase (IN) encoded by the Saccharomyces cerevisiae retrovirus-like element Ty3 has features found in retrovirus IN proteins including the catalytic triad, an amino-terminal zinc-binding motif, and a nuclear localization sequence. Mutations in the amino- and carboxyl-terminal domains of Ty3 IN cause reduced accumulation of full-length cDNA in the viruslike particles. We show that the reduction in cDNA is accompanied by reduced amounts of early intermediates such as minus-strand, strong-stop DNA. Expression of a capsid (CA)-IN fusion protein (CA-IN) complemented catalytic site and nuclear localization mutants, but not DNA mutants. However, expression of a fusion of CA, reverse transcriptase (RT), and IN (CA-RT-IN) complemented transposition of catalytic site and nuclear localization signal mutants, increased the amount of cDNA in some of the mutants, and complemented transposition of several mutants to low frequencies. Expression of a CA-RT-IN protein with a Ty3 IN catalytic site mutation did not complement transposition of either a Ty3 catalytic site mutant or a nuclear localization mutant but did increase the amount of cDNA in several mutants and complement at least one of the cDNA mutants for transposition. These in vivo data support a model in which independent IN domains can contribute to reverse transcription and integration. We conclude that during reverse transcription, the Ty3 IN domain interacts closely with the polymerase domain and may even constitute a domain within a heterodimeric RT. These studies also suggest that during integration the IN catalytic site and at least portions of the IN carboxyl-terminal domain act in cis.

Indexed as

Transcription, GeneticDNA, ComplementaryDNA, ViralIntegrasesMutationRetroelementsSaccharomyces cerevisiaeVirionVirus AssemblyDNA, ComplementaryDNA, ViralIntegrasesRetroelements

Identifiers

PMID11861848
PMCPMC135951
OpenAlexW1991799221

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.