ReviewPlant molecular biology2002
Comprehensive gene expression analysis by transcript profiling.
Review in Plant molecular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
28 citing papers in PubMed.
- Molecular analysis of drought tolerance in tea by cDNA-AFLP based transcript profiling.Molecular biotechnology · 2013Article
- cDNA-AFLP-based genetical genomics in cotton fibers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Amplified fragment length polymorphism: an invaluable fingerprinting technique for genomic, transcriptomic, and epigenetic studies.Methods in molecular biology (Clifton, N.J.) · 2012Article
- Ecological genetics and genomics of plant defenses: Evidence and approaches.Functional ecology · 2011Article
- Article
- A silver-staining cDNA-AFLP protocol suitable for transcript profiling in the latex of Hevea brasiliensis (para rubber tree).Molecular biotechnology · 2009Article
- Differential gene expression of related wheat lines with contrasting levels of head blight resistance after Fusarium graminearum inoculation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- Large-scale Gene Ontology analysis of plant transcriptome-derived sequences retrieved by AFLP technology.BMC genomics · 2008Article
- Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis.BMC plant biology · 2007Article
- Article
- Arabidopsis Gene Family Profiler (aGFP)--user-oriented transcriptomic database with easy-to-use graphic interface.BMC plant biology · 2007Article
- Transcriptional profiling by cDNA-AFLP reveals novel insights during methyl jasmonate, wounding and insect attack in Brassica napus.Plant molecular biology · 2007Article
- GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data.Algorithms for molecular biology : AMB · 2007Article
- Monitoring of gene expression profiles and identification of candidate genes involved in drought responses in Festuca mairei.Molecular genetics and genomics : MGG · 2007Article
- Identification of a novel gene (Hsdr4) involved in water-stress tolerance in wild barley.Plant molecular biology · 2007Article
- Transcriptional profiling of wheat caryopsis development using cDNA microarrays.Plant molecular biology · 2007Article
- Nucleus-encoded plastid sigma factor SIG3 transcribes specifically the psbN gene in plastids.Nucleic acids research · 2007Article
- Identification by suppression subtractive hybridization of genes that are differentially expressed between near-isogenic maize lines in association with sugarcane mosaic virus resistance.Molecular genetics and genomics : MGG · 2005Article
- KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps.Plant physiology · 2005Article
- Genome-wide expression profiling and identification of gene activities during early flower development in Arabidopsis.Plant molecular biology · 2005Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
After the completion of the genomic sequence of Arabidopsis thaliana, it is now a priority to identify all the genes, their patterns of expression and functions. Transcript profiling is playing a substantial role in annotating and determining gene functions, having advanced from one-gene-at-a-time methods to technologies that provide a holistic view of the genome. In this review, comprehensive transcript profiling methodologies are described, including two that are used extensively by the authors, cDNA-AFLP and cDNA microarraying. Both these technologies illustrate the requirement to integrate molecular biology, automation, LIMS and data analysis. With so much uncharted territory in the Arabidopsis genome, and the desire to tackle complex biological traits, such integrated systems will provide a rich source of data for the correlative, functional annotation of genes.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.