Evidence map›Paper›PMID 11854490›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

The crystal structure and mutational analysis of a novel RNA-binding domain found in the human Tap nuclear mRNA export factor.

Dona N Ho, Glen A Coburn, Yibin Kang, Bryan R Cullen, Millie M Georgiadis

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 33 citations in OpenAlex.

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  9. Atomic resolution structures in nuclear transport.Methods (San Diego, Calif.) · 2006
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Dona N HoWaksman Institute and Department of Chemistry, Rutgers University, Piscataway, NJ 08854, USA.
Glen A Coburn
Yibin Kang
Bryan R Cullen
Millie M Georgiadis
Duke University Hospital · USRutgers, The State University of New Jersey · USDuke Medical Center · US

Funding

Structural studies of protein-nucleic acid interactionsR01GM055026 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI GEORGIADIS, MILLIE M · 1997 to 2005
$1.5M
NIGMS NIH HHS GM 55026NIGMS NIH HHS R01 GM055026
6 · The paper itself

Abstract

The Tap protein mediates the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element (CTE). Previously, the structures of individual Tap subdomains, including ribonucleoprotein and leucine-rich repeat domains, have been described. Here, we report the crystal structure of a functional CTE RNA-binding domain of human Tap, including the N-terminal arm of the ribonucleoprotein domain and interdomain linking polypeptide. To identify residues that interact with the CTE, we have introduced 38 alanine substitutions for surface residues in the Tap CTE-binding domain and tested these mutants for their ability to support CTE-dependent nuclear RNA export and CTE binding. Four residues that cluster on a concave surface in the leucine-rich repeat domain were found to be critical for CTE binding and define a CTE-interacting surface on this domain. The second critical CTE-interacting surface on Tap is defined by three previously identified residues on the surface of the ribonucleoprotein domain. The structural and mutational data define a novel RNA-binding site on the Tap protein.

Indexed as

Nucleocytoplasmic Transport ProteinsAmino Acid MotifsAnimalsBinding SitesCell LineCrystallography, X-RayDNA Mutational AnalysisEscherichia coliHumansModels, MolecularNuclear ProteinsProtein Structure, TertiaryQuailRetroviridaeRNARNA-Binding ProteinsNuclear ProteinsNucleocytoplasmic Transport ProteinsNXF1 protein, humanRNARNA-Binding ProteinsRNA, Messenger

Identifiers

PMID11854490
PMCPMC122289
OpenAlexW2134501763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.