Evidence map›Paper›PMID 11854357›Full record

ArticleThe Journal of experimental medicine2002

Characterization of T cell differentiation in the murine gut.

Florence Lambolez, Orly Azogui, Anne-Marie Joret, Corinne Garcia, Harald von Boehmer, James Di Santo, Sophie Ezine, Benedita Rocha

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. Bcl-2 Is Necessary to Counteract Bim and Promote Survival of TCRαβJournal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  3. Development and function of natural TCRFrontiers in immunology · 2022
    Review
  4. Article
  5. Review
  6. Article
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  13. Article
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  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Surveillance B lymphocytes and mucosal immunoregulation.Springer seminars in immunopathology · 2005
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Florence LambolezInstitut National de la Santé et de la Recherche Médicale (INSERM) U345, Institut Necker, Rue de Vaugirard, 75730 Paris Cedex 15, France.
Orly Azogui
Anne-Marie Joret
Corinne Garcia
Harald von Boehmer
James Di Santo
Sophie Ezine
Benedita Rocha
Inserm · FRInstitut Necker Enfants Malades · FRHarvard University · USInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gut intraepithelial CD8 T lymphocytes (T-IEL) are distinct from thymus-derived cells and are thought to derive locally from cryptopatch (CP) precursors. The intermediate stages of differentiation between CP and mature T-IEL were not identified, and the local differentiation process was not characterized. We identified and characterized six phenotypically distinct lineage-negative populations in the CP and the gut epithelium: (a) we determined the kinetics of their generation from bone marrow precursors; (b) we quantified CD3-epsilon, recombination activating gene (Rag)-1, and pre-Talpha mRNAs expression at single cell level; (c) we characterized TCR-beta, -gamma, and -alpha locus rearrangements; and (d) we studied the impact of different mutations on the local differentiation. These data allowed us to establish a sequence of T cell precursor differentiation in the gut. We also observed that the gut differentiation varied from that of the thymus by a very low frequency of pre-Talpha chain mRNA expression, a different kinetics of Rag-1 mRNA expression, and a much higher impact of CD3 epsilon/delta and pre-Talpha deficiencies. Finally, only 3% of CP cells were clearly involved in T cell differentiation, suggesting that these structures may have additional physiological roles in the gut.

Indexed as

CD3 ComplexCell DifferentiationAnimalsCell LineageCell SizeDigestive SystemDNA-Binding ProteinsFlow CytometryGene Expression RegulationGene Rearrangement, T-LymphocyteGenes, RAG-1Genes, T-Cell Receptor alphaHematopoietic Stem CellsIntestinal MucosaMiceMice, Inbred C57BLCD3 ComplexCD3E protein, humanDNA-Binding ProteinsRag2 protein, mouseReceptors, Antigen, T-CellRNA, MessengerV(D)J recombination activating protein 2

Identifiers

PMID11854357
PMCPMC2193617
OpenAlexW2136314101

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.