Evidence map›Paper›PMID 11847278›Full record

ArticleProtein science : a publication of the Protein Society2002

Expression, purification, and activities of full-length and truncated versions of the integral membrane protein Vpu from HIV-1.

Che Ma, Francesca M Marassi, David H Jones, Suzana K Straus, Stephan Bour, Klaus Strebel, Ulrich Schubert, Myrta Oblatt-Montal, Mauricio Montal, Stanley J Opella

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 123 citations in OpenAlex.

  1. The soluble state of the HIV-1 Vpu protein forms a complex with CaProtein science : a publication of the Protein Society · 2026
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  9. A Paradigm for Peptide Hormone-GPCR Analyses.Molecules (Basel, Switzerland) · 2020
    Review
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  16. Review
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  18. Article
  19. Magic angle spinning NMR of viruses.Progress in nuclear magnetic resonance spectroscopy · 2015
    Review
  20. Review

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Che MaDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA.
Francesca M Marassi
David H Jones
Suzana K Straus
Stephan Bour
Klaus Strebel
Ulrich Schubert
Myrta Oblatt-Montal
Mauricio Montal
Stanley J Opella
University of California, San Diego · USNational Institute of Allergy and Infectious Diseases · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

STRUCTURE DETERMINATION OF VPU FROM HIV 1P01GM056538 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI MONTAL, MAURICIO S · 1997 to 2002
$1.6M
Structure of Mammary Tumor Mat8 and the FXYD proteinsR01CA082864 · NCI · BURNHAM INSTITUTE FOR MEDICAL RESEARCH · PI MARASSI, FRANCESCA M · 2001 to 2005
$1.5M
PROTEOLYTIC GENERATION OF ANTIGENIC PEPTIDESZ01AI000658 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI BENNINK, JACK R · 1992 to 2008
$1.1M
Molecular Analysis Of Retroviral Genes &Their ProductsZ01AI000669 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI STREBEL, KLAUS · 1993 to 2008
$852k
NCI NIH HHS R01 CA082864NCRR NIH HHS P41RR09731NIGMS NIH HHS P01GM56538
6 · The paper itself

Abstract

Vpu is an 81-residue accessory protein of HIV-1. Because it is a membrane protein, it presents substantial technical challenges for the characterization of its structure and function, which are of considerable interest because the protein enhances the release of new virus particles from cells infected with HIV-1 and induces the intracellular degradation of the CD4 receptor protein. The Vpu-mediated enhancement of the virus release rate from HIV-1-infected cells is correlated with the expression of an ion channel activity associated with the transmembrane hydrophobic helical domain. Vpu-induced CD4 degradation and, to a lesser extent, enhancement of particle release are both dependent on the phosphorylation of two highly conserved serine residues in the cytoplasmic domain of Vpu. To define the minimal folding units of Vpu and to identify their activities, we prepared three truncated forms of Vpu and compared their structural and functional properties to those of full-length Vpu (residues 2-81). Vpu(2-37) encompasses the N-terminal transmembrane alpha-helix; Vpu(2-51) spans the N-terminal transmembrane helix and the first cytoplasmic alpha-helix; Vpu(28-81) includes the entire cytoplasmic domain containing the two C-terminal amphipathic alpha-helices without the transmembrane helix. Uniformly isotopically labeled samples of the polypeptides derived from Vpu were prepared by expression of fusion proteins in E. coli and were studied in the model membrane environments of lipid micelles by solution NMR spectroscopy and oriented lipid bilayers by solid-state NMR spectroscopy. The assignment of backbone resonances enabled the secondary structure of the constructs corresponding to the transmembrane and the cytoplasmic domains of Vpu to be defined in micelle samples by solution NMR spectroscopy. Solid-state NMR spectra of the polypeptides in oriented lipid bilayers demonstrated that the topology of the domains is retained in the truncated polypeptides. The biological activities of the constructs of Vpu were evaluated. The ion channel activity is confined to the transmembrane alpha-helix. The C-terminal alpha-helices modulate or promote the oligomerization of Vpu in the membrane and stabilize the conductive state of the channel, in addition to their involvement in CD4 degradation.

Indexed as

Amino Acid SubstitutionCD4 AntigensCloning, MolecularHIV-1Human Immunodeficiency Virus ProteinsIon ChannelsMagnetic Resonance SpectroscopyMethionineProtein FoldingProtein Structure, SecondaryRadioisotopesViral Regulatory and Accessory ProteinsViroporin ProteinsCD4 AntigensHuman Immunodeficiency Virus ProteinsIon ChannelsMethionineRadioisotopesViral Regulatory and Accessory ProteinsViroporin Proteinsvpu protein, Human immunodeficiency virus 1

Identifiers

PMID11847278
PMCPMC2373459
OpenAlexW2014283693

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.