Evidence map›Paper›PMID 11844762›Full record

ArticleJournal of bacteriology2002

Trinucleotide GAA repeats dictate pMGA gene expression in Mycoplasma gallisepticum by affecting spacing between flanking regions.

Li Liu, Victor S Panangala, Kevin Dybvig

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. Comparative Analysis ofFrontiers in genetics · 2018
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  12. Microsatellite instability regulates transcription factor binding and gene expression.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Li LiuDepartment of Genomics and Pathobiology, Volker Hall, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Victor S Panangala
Kevin Dybvig
University of Alabama at Birmingham · USAuburn University · US

Funding

Antigenic Variation in MycoplasmasR21AI041113 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DYBVIG, KEVIN F · 2004 to 2004
$337k
ANTIGENIC VARIATION IN MYCOPLASMASR01AI041113 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DYBVIG, KEVIN F · 1997 to 2000
$200k
NIAID NIH HHS AI 41113NIAID NIH HHS R01 AI041113NIAID NIH HHS R21 AI041113
6 · The paper itself

Abstract

The pMGA genes of the avian respiratory pathogen Mycoplasma gallisepticum encode a family of hemagglutinins that are subject to phase variation. A trinucleotide GAA repeat region is located upstream of the pMGA transcription start site. The length of the repeat region varies at a high frequency due to changes in the number of repeat units. Previous studies have shown that pMGA genes are transcribed when 12 GAA repeats are present but are not transcribed when the number of repeats is not 12. To further analyze the mechanism of gene regulation, the pMGA promoter region was modified either by deleting the nucleotides 5" of the GAA repeats or by inserting linkers of 10 or 12 bp at a position 3" of the repeats. The modified promoter region was fused to a promoterless lacZ gene and transformed into M. gallisepticum by using transposon Tn4001 as a vector. Transformants and successive generations of progeny were analyzed with 5-bromo-4-chloro-3-indolyl-beta-D-galactopyranoside (X-Gal) to monitor beta-galactosidase activity. For the transformants of M. gallisepticum containing the reporter with deletion of nucleotides 5" of the GAA repeats, GAA-dependent pMGA gene regulation was abolished. For the transformants containing the reporter with an addition of 10- or 12-bp linkers, lacZ was expressed only when eight GAA repeats were present. These data indicate that the nucleotides 5" of the GAA repeats as well as the spacing between the GAA repeats and sequences downstream (3") of the repeats are important for pMGA gene expression.

Indexed as

Gene Expression Regulation, Bacterial5' Flanking RegionAmino Acid SequenceAnimalsBacterial ProteinsBase SequenceDeoxyribonucleases, Type II Site-SpecificMolecular Sequence DataMycoplasmaTranscription, GeneticTrinucleotide RepeatsBacterial ProteinsDeoxyribonucleases, Type II Site-SpecificGTCGAC-specific type II deoxyribonucleasesM9 protein, Mycoplasma gallisepticum

Identifiers

PMID11844762
PMCPMC134842
OpenAlexW2145472585

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.